BtaEX0023599 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4819957-4820902:-
Coord C1 exon
chr2:4820819-4820902
Coord A exon
chr2:4820525-4820644
Coord C2 exon
chr2:4819957-4820115
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCGCCTGCTGTGGCCACAGGAC
3' ss Score
8.28
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAAACCTCGGAGCCCTCCCACCCGGACATCATCCTCATCGCCATCAACCGGCACGGGGTCCTGCTCATCCACCCCAAGACCAAG
Seq A exon
GACCTGCTCACCACCTACCCCTTCACCAAGATCGCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGTGCTGGGGGGGCTGGGCCGGGGCAGCCGCCTGCTGTGTGAGACCTCTCTG
Seq C2 exon
GGCTACAAGATGGATGACCTGCTGACCTCATATGTGCAGCAGCTGATAAGCGCCGTGAACCGGCAGCGGGCCCCCCGCGGCTCAGTCCCAAGCCACCCGTAGCAGCAGGGTCCTCTGGCCCACTCAGCCGCCCTCCCCAGTCAGGGGTCATTGTGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTCGGAGCCCTCCC
R:
CCCCACAATGACCCCTGACT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development