DreEX0048770 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3181016-3184791:+
Coord C1 exon
chr18:3181016-3181099
Coord A exon
chr18:3182182-3182301
Coord C2 exon
chr18:3183836-3184791
Length
120 bp
Sequences
Splice sites
3' ss Seq
TATTTGTGTTTTCTCTGCAGGAC
3' ss Score
11.89
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CAAACCACTGAGCCGCACTTCCCTGAGATCCTGCTGATCGCCATCAACAAATATGGAGTCAGTCTGATCGACCCCAAAAACAAG
Seq A exon
GACATTTTAACCACATATCCCTTCACCAAAATCTCCAACTGGAGCAGCGGCAACACGTACTTCCACATCACAATCGGCAACCTGGTTCAGGGTAGCAAACTCCTGTGTGAGACCTCACTG
Seq C2 exon
GGCTATAAAATGGACGACCTGTTGACCTCCTACATTAGCCAGATGCTTACCACCATGAGCAAACAGCGAAACTCGCGCGGCGGCAGCAGCAAGTGAACGTTTGATTGGCTGGAGGCGGTGGAGCTAGTGCGTCTGCTGCGTCCCATTGGCCAGCCCTGCAGCTGGGGGCGGGCCTTCGCGGCGCAACTGTGGCGGATGAGCAGAACTCCCTCTGCCAGCACACAGAGCTCAATGTACCCGGATGAAGACTCTTCCTCTGAGGACGACTACCTCTGAACACACACACAAACACACGGATTCATCCGTTCTCCAGAATATTCTTCAGATGCGCAATTTAGGTACCGTTTATTACGTTTTGTGAGTCGAATATAAACTGCAATGGCTTCTATGCATCCCAAACTGCTTTAAAGAGGCAGTGTTTGGGTTATTTATGTGTAAATGCACTAAGAAAACAACATGTGCACGACTTCCTGAAGAGTAATTGATTGATTATTTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'52-50,'52-49,53-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTCTGATCGACCCCA
R:
AGAGGGAGTTCTGCTCATCCG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]