GgaEX6006895 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192356567-192358140:-
Coord C1 exon
chr1:192358057-192358140
Coord A exon
chr1:192357452-192357571
Coord C2 exon
chr1:192356567-192356656
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTGTGTTCCCACCAGGAT
3' ss Score
8.34
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAATTATCCAGAAATCCTCCTAATTGCCATCAATAAACATGGAGTCAGCCTCATCGATCCTAAAACCAAG
Seq A exon
GATATTCTCATCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGTGGCAACACGTACTTCCATATAACGATCGGCAATCTGGTGAGGGGAAGCAAGCTGCTCTGCGAGACATCCCTG
Seq C2 exon
GGCTACAAGATGGATGATCTTCTGACCTCATACATCAGCCAGATGCTAACAGCCATGAGCAAACAGAGGAGTGCGAAGGGTAGCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'61-62,'61-61,62-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGAGCCAAATTATCCAGA
R:
CACTTGCTACCCTTCGCACTC
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]