GgaEX6006895 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198105060-198106633:-
Coord C1 exon
chr1:198106550-198106633
Coord A exon
chr1:198105945-198106064
Coord C2 exon
chr1:198105060-198105149
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTGTGTTCCCACCAGGAT
3' ss Score
8.34
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAATTATCCAGAAATCCTCCTAATTGCCATCAATAAACATGGAGTCAGCCTCATCGATCCTAAAACCAAG
Seq A exon
GATATTCTCATCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGTGGCAACACGTACTTCCATATAACGATCGGCAATCTGGTGAGGGGAAGCAAGCTGCTCTGCGAGACATCCCTG
Seq C2 exon
GGCTACAAGATGGATGATCTTCTGACCTCATACATCAGCCAGATGCTAACAGCCATGAGCAAACAGAGGAGTGCGAAGGGTAGCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(40.9=100)
A:
PF0064018=PID=PD(50.0=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGAGCCAAATTATCCAGA
R:
CACTTGCTACCCTTCGCACTC
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]