MmuEX6012419 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98051060-98053240:-
Coord C1 exon
chr7:98053157-98053240
Coord A exon
chr7:98052195-98052314
Coord C2 exon
chr7:98051060-98051716
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTCGACCTTCTCTCCCAGGAC
3' ss Score
9.38
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CAAACTACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTACGGGGTCAGCCTCATCGATCCCAGAACCAAG
Seq A exon
GACATCCTGACTACTCACCCCTTCACCAAGATCTCCAACTGGAGTAGTGGCAACACCTACTTCCACATCACCATTGGGAACTTGGTCCGTGGGAGCAAACTGCTCTGTGAGACATCGCTG
Seq C2 exon
GGATACAAAATGGATGATCTTCTGACTTCCTACATCAGCCAGATGCTCACAGCCATGAGCAAGCAGAGGAACTCCAGGAGTGGAAGGTGAACCTCAGAGGAGACGCTGGCTCAGGCCTTGGCCCTCTAGGCAGGGAAGCTGGACTGACCATATCTGCTGGGCATCTGATCTGCCTGCCACGAGGTCCAGACTCTTCTGCATCCACCTATGGCATCTGGGTTTGCTGTCACCCTACTTTGTTGTGGCCTTCCTGGTGTAAGAGTCTGTGTTCCTTGGTCACCTCTCCTGATTCAGACCAGCTCCATCAAGCAACCTCTTTTGACTTTCTGTATATGGATGGCACAGAGGAATCAAGGACAACTTAGCTCTCTGCATACTTGGAACAACCAAACTATTTGTACATTGAACGGATGCTCTGAAACCCAAGGGACTGGGCTCAGGGTCCTCAGCACTGGCCCCTGTCATAAGCACTACCACTAAGGACTCTCTGGAGGACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'86-92,'86-90,88-92
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCATCAACAAGTACGGGG
R:
AGAAGAGTCTGGACCTCGTGG
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types