BtaEX6060053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57412113-57419714:+
Coord C1 exon
chr15:57412113-57412196
Coord A exon
chr15:57413082-57413201
Coord C2 exon
chr15:57419078-57419714
Length
120 bp
Sequences
Splice sites
3' ss Seq
GATTCTCTCTGCTCCCCTAGGAC
3' ss Score
10.46
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAACTTTCCTGAGATCCTCTTAATTGCCATCAACAAGTATGGGGTCAGCCTCATTGATCCGAGAACCAAG
Seq A exon
GACATCCTGACCACTCACCCCTTCACCAAGATCTCCAACTGGAGCAGCGGCAACACCTACTTCCACATCACCATTGGGAACCTGGTGCGTGGGAGCAAACTCCTCTGTGAGACGTCACTG
Seq C2 exon
GGCTACAAGATGGATGACCTCCTGACTTCCTATATTAGCCAGATGCTTACGGCCATGAGCAAACAGCGGGGCTCCAGGAGTGGCAAGTGAACAGTGGCCCTTTTGCTCTGGCCCTGTGCCTACTCTCAAGGAAGCAGTTGGCTCAGGACCATCAGCTACCTCTGCATCCAGGGGAAGACCTTGGCTATCCAGGCAGGGAGGCTGAACCAGCTGGCCACCACTGACTGTACCAACGTGGCCTCTGATCCTTCTTCCAGTGAGGTGACCTTGCTGGGATGTAGAACTCCCTCCATCCAGCCTGAAGCACCTGGTTGGTTCTAGTCCTGGCTTGCTGTGACAATCCCAGTTGTAAAAGCCTGTGCTCCTCGGATGTCATTCTTAACTCATACTAGCCCTACCATGTGACCTCTTTTGAGGTCATGGCCCGGAAATGTAACCAACAGGACGACCTAGTTCTCTATGCTGGGAACAACCAAACAGATTATCCTGAAACCTAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'51-57,'51-55,53-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATTGATCCGAGAACCA
R:
CGTTGGTACAGTCAGTGGTGG
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]