RnoEX0057474 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163001875-163003450:-
Coord C1 exon
chr1:163003367-163003450
Coord A exon
chr1:163002434-163002553
Coord C2 exon
chr1:163001875-163001966
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTCTACTTGCTCTCCTAGGAC
3' ss Score
9.78
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CAAACGACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTATGGGATCAGCCTCATCGATCCCAGAACCAAG
Seq A exon
GACATCTTGACTACTCACCCCTTCACCAAGATCTCCAACTGGAGTAGTGGCAACACCTACTTCCACATCACCATTGGGAACTTGGTCCGTGGGAGCAAACTGCTCTGTGAGACATCACTG
Seq C2 exon
GGATACAAAATGGATGATCTTCTGACTTCCTACATCAGCCAGATGCTCACTGCCATGAGCAAACAGAGGAACTCCAGGAGCGGGAGGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'57-57,'57-56,60-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAGAACCAAACTTCCCA
R:
TTCACCTCCCGCTCCTGG
Band lengths:
172-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]