DreEX6084368 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22270295-22272830:+
Coord C1 exon
chr21:22270295-22270378
Coord A exon
chr21:22272502-22272621
Coord C2 exon
chr21:22272738-22272830
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTACTCCTCTGTCTACAGGAT
3' ss Score
9.11
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CAATCGTCAGATCCACATTTCCCAGAAGTCCTCTTGATTGCGATCAACAAGCTTGGTGTTACTCTTATTGACCCGAAAACAAAG
Seq A exon
GATATTTTGGGAACACACCCCTTCACCAAAATCTCCAACTGGAGCAGTGGACACACATATTTCCACATCACCATTGGAAACCTGGTCAGAGGCAGCAAACTTCTGTGCGAAACATCACTA
Seq C2 exon
GGATACAAGATGGATGATCTTCTGACCTCCTACATCAGTCAGATGCTGACCACCATGACCAAGCAGCGCAGTTCACGGACAAACAACAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'52-50,'52-49,53-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.291
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGTCAGATCCACATTTCCCA
R:
GTTGTTTGTCCGTGAACTGCG
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]