BtaINT0098352 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4819957-4820644:-
Coord C1 exon
chr2:4820525-4820644
Coord A exon
chr2:4820116-4820524
Coord C2 exon
chr2:4819957-4820115
Length
409 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCCACCTTTCCTTAACGCAGGGC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GACCTGCTCACCACCTACCCCTTCACCAAGATCGCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGTGCTGGGGGGGCTGGGCCGGGGCAGCCGCCTGCTGTGTGAGACCTCTCTG
Seq A exon
GTGAGCTCCAGGCCTGAGGGGCCTTCCAAGTGCCCCAGGTCCCTTTTCCTAGCCCAGACACAAAGCGCCCAGAGGCTCTGGACACTAGGTTTCCCTCAGCCTGACCCCTGATGCCACCGGGTGAGTTGCTCATGGGAGGGCCCGGCTCCCACGCCTGGCAGGGACAAGCCAGGCTGGGCTGGTGGAGGACTCGATGGAGGTGCAGTGCGAGGAGGGCTGGGCATGTCACTCGGGGGCATCAAGGCCTGGCAGGGGCCTTTGTGGTCCCAGGAGGGATGAGTACTCAGGGCCCAGACACAGTCCTGCTTCTCTCTTTACCACGTCTGCCTGGGGTGTCACTGAGGCAGCTGGGCCCCCTAAGCCCTGGTCCACGCCCTGCCTAACTATAACCCACCTTTCCTTAACGCAG
Seq C2 exon
GGCTACAAGATGGATGACCTGCTGACCTCATATGTGCAGCAGCTGATAAGCGCCGTGAACCGGCAGCGGGCCCCCCGCGGCTCAGTCCCAAGCCACCCGTAGCAGCAGGGTCCTCTGGCCCACTCAGCCGCCCTCCCCAGTCAGGGGTCATTGTGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCTCACCACCTACCC
R:
CCCCACAATGACCCCTGACT
Band lengths:
278-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]