HsaINT0108989 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127636794-127637728:+
Coord C1 exon
chr2:127636794-127636913
Coord A exon
chr2:127636914-127637315
Coord C2 exon
chr2:127637316-127637728
Length
402 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCCCCCCGTCCCCTGTCCAGGGC
3' ss Score
10.02
Exon sequences
Seq C1 exon
GACCTGCTCACCACCTATCCCTTCACCAAGATCTCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGCGCTGGGGAGCCTGGGCCGTGGCAGCCGCCTGCTGTGCGAGACCTCCCTG
Seq A exon
GTGAGCTCAGGTTCTTTCTCCCATCCAAGATGCATAGGACAGAGCTGCTGGAGACTGGGTTCCCCACCCTCACCCCTTTCAAGTGGCTCACTAAGAGGGCTCAGTCACAGGGCCCAGGCGGGGCCAGCAGATCTGGAGAGGGCCTGGGTGCATCCCCAGGACCAGCAGCCAAGGTGGCAAGGCCAGGCGGGACCCCCTGCGCCCTTGGCCCATTCCAAGGAGGGAGGGAGACCCAGCTCCAGCAGGGCAAGCAGAAATGACGGCCCCAATGGCAGGAGCCCGCCTTCCCTTTCTCCATGCCCTGCACTGCTGGTTGCTGAGGAAGAGAAGGTGGTCCCTGAGTCCAGGACCCCCACCTGCCCTCTGCACCCACAGCCTCTGACCCCCCCGTCCCCTGTCCAG
Seq C2 exon
GGCTATAAGATGGATGACCTGCTGACCTCATATGTGCAGCAGCTCCTGAGTGCCATGAACAAGCAGCGGGGCTCCAAGGCCCCAGCCCTGGCCAGCACCTAGCAGCGGATGCTGGCGTGTCTGCTCAGGCGCCCTTCCCGACCTCTAGCCTGGCGGCACCTTCCCAGGCCCTCTCAACCCAGGGCCTGTCCTTGGCGGGCAGCCTTCCATGCTGCCCCCCATACAAAGCCCACTCAGCCCCGCAGGCGGCCCCCTCTGTCCTGGGCGCTGCCCAGGGAGGCCAAAAGACGGGCCCAGAATGGGGTCGGGAGTCTCGGACCCCCAGGCTATTGGTGGATGACTGACTGACAGGACACCTCCCAACCCCACCCCACCCCACCAGAATGTTCAATAAAAACTCCTGGAGCAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCACCACCTATCCCTT
R:
GCTGAGTGGGCTTTGTATGGG
Band lengths:
356-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development