GgaINT0031436 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:879043-880098:+
Coord C1 exon
chr9:879043-879162
Coord A exon
chr9:879163-880014
Coord C2 exon
chr9:880015-880098
Length
852 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACTTCTCTCTTTTCCAACAGGGT
3' ss Score
12.44
Exon sequences
Seq C1 exon
GAAATCTTAACAGTTTATCCCTTTAATAAAATCTCCAATTGGAGCAGTGGGAGTACATTCTTTCACATGACGATAGGGAACCTGGTACGAGGAAGCCGGATCTTATGTGAGACATCTCTG
Seq A exon
GTAAGAAGAGTTTTGTTCACTTACCTACAAAAGCTCCTCATTTTTCCTTTGTGTCCAGACCAGCTACAAACAGGAAGCCAAAGCACACCATTAAAACCAGTGCAGATAACCCATTCGCTGTTATGCCAATACAACTGCAGTTCAGAACCAATTTAGTGCTCTGTAATGCCATCTGATGCAAAGAAGCAAGTCACAGACATAAGGAAAAAAGGTCACTTCCCAAATTCTTCCCATACATAAAAATTCTACCTATCTGAGATAGAAAAGATTGCATTTAGCCATAGAACTGTGTAAGAGAATTTTCATCTTGCATGGTTTGATCCACTGTGCAAGAATGACATCTTGTAGGATTTTACTCTTAAATGAATGGTACTACCTCTTTTAGAATTGGTTTCAGACTGTTGAGACTCAGATAAGCATCACTGTACTGATATTTATAGGTAAAACTGTAAAGAAAACCTTAAAATGCCTAGGGTTTAACTTCTCTCACAGAAAAGCTTGGATTCCCAGGTACAGGATCACAGAACCACAGGGGTTGGGTGGGACCCCTGGAGGTCATCTGAGCCAGCCTCCCAATGTCTAGGCAAGATGTCTAGCTACAGAATAAATTCTAGGTTTGAATTACAAGGATATGACAATGACAGCAGAGCTGTGCTCTGTAAACTTTTGTCAGTCTATGAAAGGAAGAGCAGAGGGAAAATAGATAAATAGTTATAAAACCAGCAATAGCTGTTGGAAGAGACATCATCCATTCAGAAAAACATCTAAGAAGAAAAAACAAGGAGAAAATAGTAATTATTTTTGCTTCTGGGGCTACCTGAGAGACTTAAAGACTTCTCTCTTTTCCAACAG
Seq C2 exon
GGTTACAAAATGGATGACCTGCTGACATCCTATGTACACCTGCTGATGAATGCAGTTAACAAGCAAAAGAGCCTCCCAGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]