HsaINT0108989 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128394369-128395303:+
Coord C1 exon
chr2:128394369-128394488
Coord A exon
chr2:128394489-128394890
Coord C2 exon
chr2:128394891-128395303
Length
402 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCCCCCCGTCCCCTGTCCAGGGC
3' ss Score
10.02
Exon sequences
Seq C1 exon
GACCTGCTCACCACCTATCCCTTCACCAAGATCTCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGCGCTGGGGAGCCTGGGCCGTGGCAGCCGCCTGCTGTGCGAGACCTCCCTG
Seq A exon
GTGAGCTCAGGTTCTTTCTCCCATCCAAGATGCATAGGACAGAGCTGCTGGAGACTGGGTTCCCCACCCTCACCCCTTTCAAGTGGCTCACTAAGAGGGCTCAGTCACAGGGCCCAGGCGGGGCCAGCAGATCTGGAGAGGGCCTGGGTGCATCCCCAGGACCAGCAGCCAAGGTGGCAAGGCCAGGCGGGACCCCCTGCGCCCTTGGCCCATTCCAAGGAGGGAGGGAGACCCAGCTCCAGCAGGGCAAGCAGAAATGACGGCCCCAATGGCAGGAGCCCGCCTTCCCTTTCTCCATGCCCTGCACTGCTGGTTGCTGAGGAAGAGAAGGTGGTCCCTGAGTCCAGGACCCCCACCTGCCCTCTGCACCCACAGCCTCTGACCCCCCCGTCCCCTGTCCAG
Seq C2 exon
GGCTATAAGATGGATGACCTGCTGACCTCATATGTGCAGCAGCTCCTGAGTGCCATGAACAAGCAGCGGGGCTCCAAGGCCCCAGCCCTGGCCAGCACCTAGCAGCGGATGCTGGCGTGTCTGCTCAGGCGCCCTTCCCGACCTCTAGCCTGGCGGCACCTTCCCAGGCCCTCTCAACCCAGGGCCTGTCCTTGGCGGGCAGCCTTCCATGCTGCCCCCCATACAAAGCCCACTCAGCCCCGCAGGCGGCCCCCTCTGTCCTGGGCGCTGCCCAGGGAGGCCAAAAGACGGGCCCAGAATGGGGTCGGGAGTCTCGGACCCCCAGGCTATTGGTGGATGACTGACTGACAGGACACCTCCCAACCCCACCCCACCCCACCAGAATGTTCAATAAAAACTCCTGGAGCAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCACCACCTATCCCTT
R:
GCTGAGTGGGCTTTGTATGGG
Band lengths:
356-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)