MmuINT0104628 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32118888-32119572:-
Coord C1 exon
chr18:32119453-32119572
Coord A exon
chr18:32119157-32119452
Coord C2 exon
chr18:32118888-32119156
Length
296 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTCACCCCATCCTGTCTAGGGT
3' ss Score
7.29
Exon sequences
Seq C1 exon
GAGCTGCTGAACACCTACCCTTTCACCAAGATCTCCAGCTGGAGTAGTGGCAACACCTATTTCCACATGGCACTGGGGAGCCTGGGCCAGGGCAGCCGTTTGCTGTGTGAGACCTCTCTG
Seq A exon
GTGAGCACGGGCCCCATCTCCCACCATTACACAGCATCCTCACTATGAGAGATGGCTTGCCCATGATCAGGGCTGCAGGGAGGTTAGAGGCATCCCCGAGATTGAGAGCCAGCATGTCCAAGGACTCTAACCTGACTCTGGGCCATCCTAGGCCATTCTGAGGAGAGGGTGGAACTCGGGTACACTAGAGCAAGCAGTGGCAAAGCCCAGCCTGGGGAGCCCGTCTTTCAGTCCTACCATGTGCCCCAAGACTCTCCCTGCACCCACAGCTTCTGTCCTCACCCCATCCTGTCTAG
Seq C2 exon
GGTTACAAGATGGACGACCTGCTGACCTCATATGTACAGCAGCTCCTGAATACAGTGAACAAACAGCGGGGCTTCAGGGCTCCCGCCCCGGCCAACCCCTAACAGGTCCCATCTGCACACAAGCCTTCCACGCTGGCCTTCTACCCCCTTCTCAGCACGCCTGAGTGCCCCTCCTGGGTGTTTCCTGCAGAGGCCAAGCAAGGTCTCCAGCCTCCTCACAGATGGTGGGTAACTCCCCTGAATCTGCAATAAAAATGCACCTAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAGATCTCCAGCTGGA
R:
CTTGGCCTCTGCAGGAAACAC
Band lengths:
296-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: