GgaEX6045457 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:878299-880098:+
Coord C1 exon
chr9:878299-878382
Coord A exon
chr9:879043-879162
Coord C2 exon
chr9:880015-880098
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAATTTGTTTCTCCTTACAGGAA
3' ss Score
11.47
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CAAACCTCTGAGCCAAATTTCCCAGAGATTGTGCTGATTGCAATCAACAAGCAAGGAGTCTCAGTGATACATCAGAAGACAAAG
Seq A exon
GAAATCTTAACAGTTTATCCCTTTAATAAAATCTCCAATTGGAGCAGTGGGAGTACATTCTTTCACATGACGATAGGGAACCTGGTACGAGGAAGCCGGATCTTATGTGAGACATCTCTG
Seq C2 exon
GGTTACAAAATGGATGACCTGCTGACATCCTATGTACACCTGCTGATGAATGCAGTTAACAAGCAAAAGAGCCTCCCAGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'47-49,'47-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGAGCCAAATTTCCCA
R:
TCAAGCTGGGAGGCTCTTTTG
Band lengths:
165-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]