HsaEX6015417 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128394120-128395303:+
Coord C1 exon
chr2:128394120-128394203
Coord A exon
chr2:128394369-128394488
Coord C2 exon
chr2:128394891-128395303
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTCTCTGCCCCCAGGAC
3' ss Score
12.91
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAAACCTCGGAGCCTTCCTACCCGGACGTCATCCTCATCGCCATCAACCGACATGGGGTTCTGCTCATCCACCCCAAGACCAAG
Seq A exon
GACCTGCTCACCACCTATCCCTTCACCAAGATCTCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGCGCTGGGGAGCCTGGGCCGTGGCAGCCGCCTGCTGTGCGAGACCTCCCTG
Seq C2 exon
GGCTATAAGATGGATGACCTGCTGACCTCATATGTGCAGCAGCTCCTGAGTGCCATGAACAAGCAGCGGGGCTCCAAGGCCCCAGCCCTGGCCAGCACCTAGCAGCGGATGCTGGCGTGTCTGCTCAGGCGCCCTTCCCGACCTCTAGCCTGGCGGCACCTTCCCAGGCCCTCTCAACCCAGGGCCTGTCCTTGGCGGGCAGCCTTCCATGCTGCCCCCCATACAAAGCCCACTCAGCCCCGCAGGCGGCCCCCTCTGTCCTGGGCGCTGCCCAGGGAGGCCAAAAGACGGGCCCAGAATGGGGTCGGGAGTCTCGGACCCCCAGGCTATTGGTGGATGACTGACTGACAGGACACCTCCCAACCCCACCCCACCCCACCAGAATGTTCAATAAAAACTCCTGGAGCAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'54-61,'54-60,55-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCACCCCAAGACCAAG
R:
CTGAGTGGGCTTTGTATGGGG
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)