RnoEX6058359 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24746865-24747587:-
Coord C1 exon
chr18:24747504-24747587
Coord A exon
chr18:24747265-24747384
Coord C2 exon
chr18:24746865-24746942
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTGCCTCTCTGTTCCCAGGAA
3' ss Score
10.07
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAAACCTCTGAGCCTTCCTACCCAGACATCCTCCTCATTGCCATCAACCGACATGGGTTACTGCTCATCCACCCCAAGACCAAG
Seq A exon
GAACTGCTGGACACCTTCCCTTTCACCAAGATCTCCAGCTGGAGTAGCGGCAACACCTACTTCCATATGGCCTTGGGGAGCCTGGGCCAGGGCAGTCGTTTGCTGTGTGAGACCTCTCTG
Seq C2 exon
GGATACAAGATGGACGACCTGCTCACTTCATACGTACAGCAGATCCTGAGTGCAGTGAACAAACATCGGGGCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'59-70,'59-69,60-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTCTGAGCCTTCCTACC
R:
CCTGAAGCCCCGATGTTTGTT
Band lengths:
162-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]