MmuEX6000761 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31959234-31960119:-
Coord C1 exon
chr18:31960036-31960119
Coord A exon
chr18:31959799-31959918
Coord C2 exon
chr18:31959234-31959502
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACGGCCTCTCTGTTCCCAGGAG
3' ss Score
9.77
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAAACCTCTGAGCCTTCCTACCCAGACATTCTCCTCATCGCCATCAACCGACATGGGTTACTGCTCATCCACCCCAAGACCAAG
Seq A exon
GAGCTGCTGAACACCTACCCTTTCACCAAGATCTCCAGCTGGAGTAGTGGCAACACCTATTTCCACATGGCACTGGGGAGCCTGGGCCAGGGCAGCCGTTTGCTGTGTGAGACCTCTCTG
Seq C2 exon
GGTTACAAGATGGACGACCTGCTGACCTCATATGTACAGCAGCTCCTGAATACAGTGAACAAACAGCGGGGCTTCAGGGCTCCCGCCCCGGCCAACCCCTAACAGGTCCCATCTGCACACAAGCCTTCCACGCTGGCCTTCTACCCCCTTCTCAGCACGCCTGAGTGCCCCTCCTGGGTGTTTCCTGCAGAGGCCAAGCAAGGTCTCCAGCCTCCTCACAGATGGTGGGTAACTCCCCTGAATCTGCAATAAAAATGCACCTAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'57-73,'57-70,58-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCTCATCCACCCCAAGA
R:
ATCTGTGAGGAGGCTGGAGAC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types