HsaINT0112667 @ hg19
Intron Retention
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140348183-140348895:-
Coord C1 exon
chr9:140348843-140348895
Coord A exon
chr9:140348273-140348842
Coord C2 exon
chr9:140348183-140348272
Length
570 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GCGGGTTTTGCTCTCTGCAGCGT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGAGGGTGAAGGCCCAGA
Seq A exon
GTAAGACCCCGTGCGGCGGGGGTGGGGGGGCGGCGTTGCGCTTGGCTGGTTGGGGCTTTGCTTGCTGCTAGCTGCGATAAGAACGACCCCCGCCCCAACCCCAATCGGGCCCTGCCTCAGGCTCCTCCCCTTCCAGCCACTTCCCCAGCCCGGCCCAGGCTCCTCCCCTCCCAGCCACGCCCCCAGCCCGGCCCAGGCTCCTCCCCTCCCAGCCACGCCCCCAGCCCGGCCCAGGCTCCTCCCCTCCCAGCCACGCCCCCAGCCCGGCCCAGGCTCCTCCCCTCCCAGCCACGCCCCCAGCCCGGCCCAGGCTCCTCCCCTCCCAGCCACGCCCCCAGCCCGGCCCAGGCTCCTCCCTTCCCAGACTCCGCCTCTGGCCCTGCCCCAGTGTTCTCAGATCCTGCCCCTGAACCAACCGAGCCTCTGGTCCGTGTCTGCTTCATGTGCCTTAGACCCCACCCACATTAGCTTCCTCCTCTGCCCAGGGCCCCTGTGGTCCCCTCGCCTGGGGTCTGAGACTCCCGAGGCCCCGCCCCACCCGCTCGCTAATGCGGGTTTTGCTCTCTGCAG
Seq C2 exon
CGTTCGCTGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACTTCCCACGACTCCCGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-NELF:NM_001130970:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139501=Epimerase_Csub=PU(27.7=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)