GgaINT0125025 @ galGal4
Intron Retention
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1744910-1747108:+
Coord C1 exon
chr17:1744910-1744962
Coord A exon
chr17:1744963-1747018
Coord C2 exon
chr17:1747019-1747108
Length
2056 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTGCTTTGGTTTTATCCTAGCAT
3' ss Score
4.98
Exon sequences
Seq C1 exon
GAATTTTCGGAAGCACCTCCGCATGGTGGGGAGCCGAAGGGTTAAAGCACAAA
Seq A exon
GTAAGTGAGAACCTGTAAGATGTGGCTGTGAGGAGCTGGGGTTTGTGCTGGTGGTTTACAGGGAGCCCAAGTTGTGCACAGATGCCAGTAGAAAGGAGCTAGCATTGGGCTGGAGAAAGGATTTGACCTGCTGATGCCATTTTACCTTATGAAGAGAAGGCCAGGTTGTTGCAAGTCTCCAAGGCACATGGATATCTGCAAGCAGCCTTTAAGCTGCTTCCAAAGACCTTCTGCATTGGCCGTGGGAGATTTGCATCCTCCGTATGAGGTGTGTGGAAGAGCTGCAGCATCCTTGTCCCACGTCTGCATGGTATGTGGTGATCACTGGTGTAACAGTGAGGAGAACCAGAGCTGAAAATTGAGCAGAGTGAGCTGTCTGGCTTCTCACTGAAGGTGTGGACCTGCTGTGGTTCCCTGGAGGCAGTTGGTGCTTTGTGTGCCATGTGGACTGGTGGCTTTCTCTTTTCTCCACCCCTATCCCACCACCATATCTTCCCCACAGCAGGGCCTGGGGAGAGGTGCCCAGTGGGATCTGAGAGGAAGGTTGTGGAGAGAAAGAAGAACAGGAAAGAGATTGGAGCAAGGGATAAATAAAGGGATCATTATGCTTTACTTGGGAAGAAATCACCTCGTAGGCCTGGGAAACAGCAGTTCCCTTTCCATGAGGAAGGCAGTGCTTGTCCATAACTTGGCTGCGACAGCTCCCCCGTAGCTGTGGAATGGGCTGAGAGTGGTGTAGCCAACCCCTGAGAGCTGAGAATTGTTCCAGAAGAGGAAACAGCTTGTTCTTGCCACCGCCTGGCCAGGTGTCACATACAGACTGCCCACAGCAAAAGTGTTGCTGGGTTGAATTTGCATTGAATTTCCTCTCCATTCTGATATGCTGTGGGAAGTAGACAGCAAACAGCATTGCCTTTTAAAGTGTCTTTATTGGCATCTGAGTTAGCACTGCCTGAAATGAAGAGGGCTCACCTTCACCTAGAGCTGTCTGTAAGTTCAGGCATGCCTCTCTGCCTTGGTAACTCTCGGGTCATGTTTTCAAAGCTTTCTCTACGTGCTCAATAGCTCCCTGTGTTGTTTTAAATGAAAGCTGAGGATGGAAATCACCTGAAGAACTTCCCATATGATTTGTTTCCCTGGACCCTCGCACTTGGACACGCTGCAGCGGAGGACAGGTTCCTTCTCAGCTCTTGCAATGCAGATCTGCCCTGATTTCCTGTGTTGCTGATGTGAGATGTTGTTACTAGATATATATTGCAGCGAGCTTGATCTGTCTGCCACCAGAAATAGGCATTAGTGGCCCTAAGTGGCTGTTAATCTAGATGTAATGGCTCTCCCAGGGAATTGCCAGGTTAGACATTATGGTTGATGATTCTCAGATATCTGCCTGCAGGGCAGTCAGCTGGGCCAAGCTCCCTGGGTTCCGCTTGGGAAATGCCAGTACAGATGGCCCTTGGAGAAAGAAAAAAAATAATATGTATATATCTATGAAAAAAAAAAAAGGGGGTGAAAAATGCTTATAGCACAGCAGGTGAACAAAAACTGAAGTATTTCTTCTTCTGCCAGAAAATTTGGAAAGCATGAGCTTTCTAAAGGCCCCTTCTCTGATGGAACAGAACAAGAAGAGAACATCCTAAAACATGAGAAGGGAGAAATGACTGGACAGCTGACTTCTAGTTACAGGTGTCATTAGCTGTTGTGTGTGCACCTTCTTGTGAAGGCTTTGAGTCAGAGCATCGACACTGGGATATTGGGATCGCCCTGATGAAATTGAGGTTTGAGCAGTGCTCATGTAAGGAGTGACCATCGAGTGTCCTTTTTCTGTGTTGTGTATCCCACAATGGCTCGGCTCTGAAAGTGGGCACTTCTGCTGCTCTCTGGAAGACAGACCCTTGTTTGCTGTGTGGAGAGGAGTCATGTTTGGCAAGTGGAAGACCAAGCACAGGGGAGATCGTGATGTGTGGCTTTGGTGGAAATCTACTGGATGTTTTGTTTTGCTGGCAGCAACCAAGGTGGCTTTGGAGTCTGTTAATGTCGTGCTTTGGTTTTATCCTAG
Seq C2 exon
CATTTGCCGAACGGCGTGAGAGGAGCTTCAGCAGGTCCTGGAGTGACCCGACTCCCATCAAAGCTGATTCCTTCCATGACTCTCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681:ENSGALT00000014129:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]