GgaEX0012665 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1744910-1748929:+
Coord C1 exon
chr17:1744910-1744962
Coord A exon
chr17:1747019-1747108
Coord C2 exon
chr17:1748808-1748929
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTGGTTTTATCCTAGCAT
3' ss Score
4.98
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAATTTTCGGAAGCACCTCCGCATGGTGGGGAGCCGAAGGGTTAAAGCACAAA
Seq A exon
CATTTGCCGAACGGCGTGAGAGGAGCTTCAGCAGGTCCTGGAGTGACCCGACTCCCATCAAAGCTGATTCCTTCCATGACTCTCGAGAAA
Seq C2 exon
GCCATGACCTTCAGGATTCCTGTGGCACTTTGGATGGTGACTTTGACTTGAACTGGGAAGCAGAAAAGGAGCTTGAAGCCATGGCGTGTGACGGAGAAGACTTTATTCCACCAAAAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTTCGGAAGCACCTCCG
R:
TTGGTGGAATAAAGTCTTCTCCGT
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]