HsaEX0042576 @ hg38
Exon Skipping
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137453056-137454443:-
Coord C1 exon
chr9:137454391-137454443
Coord A exon
chr9:137453731-137453820
Coord C2 exon
chr9:137453056-137453180
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCGGGTTTTGCTCTCTGCAGCGT
3' ss Score
7.75
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGAGGGTGAAGGCCCAGA
Seq A exon
CGTTCGCTGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACTTCCCACGACTCCCGAGACA
Seq C2 exon
GCAGTGACCTGCAGAGCTCCCACTGCACGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAAGGCTTCGTGCCACCAAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'16-23,'16-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.769 C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCCGCAAACACCTGC
R:
ATGACCTTTGGTGGCACGAAG
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development