MmuEX0031487 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25059021-25060263:+
Coord C1 exon
chr2:25059021-25059073
Coord A exon
chr2:25059605-25059694
Coord C2 exon
chr2:25060139-25060263
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTCACTCACTGCAGCGT
3' ss Score
9.36
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
Seq A exon
CGTTCGCTGAGCGTCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACTTCCCACGACTCCCGAGACA
Seq C2 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGTCTGGAGGCCATGGCCTGCAACACCGAGGGCTTCTTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476_MULTIEX2-1/8=C1-2
Average complexity
S*
Mappability confidence:
92%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.802 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142521=DUF4347=PU(1.4=4.7)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACACCTGCGCATGGTTG
R:
CATGACCTTGGGTGGCAAGAA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types