RnoEX0061205 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2266777-2268040:+
Coord C1 exon
chr3:2266777-2266829
Coord A exon
chr3:2267381-2267470
Coord C2 exon
chr3:2267916-2268040
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTCACTCACTGCAGCGT
3' ss Score
9.36
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
Seq A exon
CGTTCGCTGAGCGGCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACCTCCCACGACTCCCGAGACA
Seq C2 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGCCTGGAGGCCACGGCCTGCGACACTGAGGGCTTCTTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.839 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACACCTGCGCATGGTTG
R:
CATGACCTTGGGTGGCAAGAA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]