BtaEX0025003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105678870-105680002:+
Coord C1 exon
chr11:105678870-105678922
Coord A exon
chr11:105679259-105679348
Coord C2 exon
chr11:105679878-105680002
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGGCTCTGCTCTCACTGCAGCGT
3' ss Score
7.61
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGCGGGTGAAGGCCCAGA
Seq A exon
CGTTCGCCGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACCTCTCACGACTCCCGAGACA
Seq C2 exon
GTAGTGACCTGCAGAGCTCCCATTGCACCCTGGGCGAGGCTTTCGAGGACCTGGACTGGGAGACTGAGAAGGGCCTGGAGGCTGTAGCCTGTGACACTGAGGGCTTCGTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.774 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142521=DUF4347=PU(1.4=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCCGCAAACACCTGC
R:
ATGACCTTGGGTGGCACGAAG
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development