HsaEX0042576 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140347508-140348895:-
Coord C1 exon
chr9:140348843-140348895
Coord A exon
chr9:140348183-140348272
Coord C2 exon
chr9:140347508-140347632
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCGGGTTTTGCTCTCTGCAGCGT
3' ss Score
7.75
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGAGGGTGAAGGCCCAGA
Seq A exon
CGTTCGCTGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACTTCCCACGACTCCCGAGACA
Seq C2 exon
GCAGTGACCTGCAGAGCTCCCACTGCACGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAAGGCTTCGTGCCACCAAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.733 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
PF139501=Epimerase_Csub=PU(27.7=41.9)
C2:
PF139501=Epimerase_Csub=PD(70.2=78.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCCGCAAACACCTGC
R:
ATGACCTTTGGTGGCACGAAG
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)