DreEX0051780 @ danRer10
Exon Skipping
Gene
ENSDARG00000101234 | nsmfb
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor b [Source:ZFIN;Acc:ZDB-GENE-080603-4]
Coordinates
chr5:27859080-27862363:+
Coord C1 exon
chr5:27859080-27859132
Coord A exon
chr5:27859606-27859695
Coord C2 exon
chr5:27862236-27862363
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCGCTTCGTTATTAGCAT
3' ss Score
6.21
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAACTTCCGGAAACATCTGAGGATGGTGGGCAGCAGGAGGGTGAAGGCCCAGA
Seq A exon
CATTTGTTGATCGCAAAGCGAAGAGTTTCAGCCGGTCCTGGAGTGACCCCACACCCGTCAAGCCTGACTCTCTCCATGACTCCAGAGACA
Seq C2 exon
GTGGAGACCTTCAGGCATCGTCTGGCAATCTGGATGAAGAAGACTGTGATGATGTCGACTGGGAGGAAGAGAGAGAGTTAGAAAGGGCGGCCTGTGAGGGTGACGATTTCATCCCACCCAAACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101234_MULTIEX1-5/11=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.629 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142521=DUF4347=PU(1.4=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGGAAACATCTGAGGA
R:
GGTGGGATGAAATCGTCACCC
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]