RnoINT0103503 @ rn6
Intron Retention
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2266777-2268040:+
Coord C1 exon
chr3:2266777-2266829
Coord A exon
chr3:2266830-2267915
Coord C2 exon
chr3:2267916-2268040
Length
1086 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GTGACCCCTCCTGCCTCCAGGCA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
Seq A exon
GTAAGAGGGGTCCAGGGAGGGGCGTCGCTGCGCTTGGCAGTCTGGGGCTTCTTGGCAAGCTGGCTTTGCATGCTGGCAGTGCGCCTCCATCAGCCTGTTCCGGCCCCACATACACACACAAGCACCGCCACCGCCCATTGGCCTGTTCTGCCTTCCCCTCAGCTCTTGCCCCTTCTCTGTTGTTCTGCTCCTGTCCATCTCTGTCTCAGTGTTCTGTCTTGTCCCCAGCAGTGTTCTGCCTCACCTAGGCCCTACTTGACCAGCCCCCTAACCTACTGTTCTGCCTGGCTTAGGCCCTGCCCTGAGCCCACAGTAGTCCACACTGTGCCCCTTTGCCTCCACCCTCACGTCCTCCAAGTCCAGACTCTGCTCCTAGTATGCTGTGCCTCTATTCAAGTCTCACCGTTGGTCTTAGTCCACTCTCTGTGACCTCAGGCCCGGTCCTTGTCAGCTTCTGCCTCTCCGCACACCCCAGCCCCCATCCCAGGGCCTGAGTCTGCTCTGTTCTTGCCCTCTCTGACTAATAGGGGTTTTGCTCTCACTCACTGCAGCGTTCGCTGAGCGGCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACCTCCCACGACTCCCGAGACAGTAGGTGTCCAGGTGCAGGCTGGCCCACTTCCCTGACAAGTTCCTTAGGCTCCATATCCCTGTCAGAGTCCCAATGCCAGTACCGCTAGGCTTCTGCGCTTTTGCTCTCTGAGCCTCAGTTTACCTGTCTATGAGATGGGAGTACTTGGAATCTCCTATCTCTTAGGCAGGATTAACTAATGGCTAAGCAGTGCTGACAGGGGCATTTGTAAGGTGGTACCCACTTCTCTCAGGGAGTACTTGGCCTCAGGTGATGCCTGTGCTGGGTCCCAGCTTCACATGTCTCTCCTCTTCCTATGTGGGGGCTGCTTCCCACTGGTGTCAGTGGCCTGGCTCTGCAGTTTGACTGTGACTGTAGCCTTCACACCTACCCAAAGACCCTCCAGGACATGGTTGGGCTCTATGGGTGGTATGCCACTCTCCTGGTGACCCCTCCTGCCTCCAG
Seq C2 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGCCTGGAGGCCACGGCCTGCGACACTGAGGGCTTCTTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810:ENSRNOT00000012129:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]