DreEX0051767 @ danRer10
Exon Skipping
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13377028-13383744:-
Coord C1 exon
chr21:13383692-13383744
Coord A exon
chr21:13383215-13383304
Coord C2 exon
chr21:13377028-13377155
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTCCAATTCACTAGCAT
3' ss Score
3.79
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAACTTCCGGAAGCATTTACGAATGGTGGGCAGCAGACGAATGAAAGCACAAA
Seq A exon
CATTTGCAGAGCGCAGGGCGAAGAGTTTCAACCGATCCTGGAGCGATCCAACCCCTGTCAAACAAGACTCTCTAACCGACTCAAAAGACA
Seq C2 exon
GTGGAGAGCTGCAGGGCACCTGCTGCACCCCAGATGAGGCCAGATGTGAAGACATGGACTGGGAGGAGGAGAGAGAGATGGAGAGACTGGCCTGTGAGGGAGACGACTTTATCCCTCCCAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.774 C2=0.314
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142521=DUF4347=PU(1.4=4.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAAGCATTTACGAATGG
R:
TGGGAGGGATAAAGTCGTCTCC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]