MmuINT0107695 @ mm10
Intron Retention
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25059021-25059694:+
Coord C1 exon
chr2:25059021-25059073
Coord A exon
chr2:25059074-25059604
Coord C2 exon
chr2:25059605-25059694
Length
531 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
TTTGCTCTCACTCACTGCAGCGT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
Seq A exon
GTAAGATGGGTCCTGGGAAGGTGGGCACAGCTGTGCTTGGCAGTCTGGGCTTCTTGGCAAGCTGGGCTTTGCATGTTGGCAGTCTACCTCCCTCAGCCTGCTCTGGCCCCACTGGTTGGCCTGTTCTGCCTTCCCCTCAGCTTTTGCCCCCTCTCTTGTGTCGTCGTGTCTGTCTCTGTCTCAGTGCTCTGTCTTGCCCCCAATAGTGTTGGACCTCACCTAGGCCCTACTTGACCAGCCCCTGACCTAGTGTTCTGCCTGCTTAGGCTCTGCCCTGAGCCTACAGTAGGCCCACAGTAGTCCACACTGTGTCCTTTGCTTCCACCCTTGTGTCCTCTAAGTCTAGATTCTGATCCTGGTATCTGTGCCTCTACATGAACCGTACCGTTGGTCTTAGTCCACTATCTGTGACCTCAGGCTGGTCCTTGTCAGCTTCTGCCTCTCCACACACCCCAGCCCCCTTCCCAGAGCCTGAGTCTTCTCTGCTCTCGCCCCCTCTGGCTAATGGGGTTTTGCTCTCACTCACTGCAG
Seq C2 exon
CGTTCGCTGAGCGTCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACTTCCCACGACTCCCGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476:ENSMUST00000100334:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types