HsaINT0114205 @ hg19
Intron Retention
Gene
ENSG00000157064 | NMNAT2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:HGNC Symbol;Acc:16789]
Coordinates
chr1:183230137-183230438:-
Coord C1 exon
chr1:183230337-183230438
Coord A exon
chr1:183230205-183230336
Coord C2 exon
chr1:183230137-183230204
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTGTCTGCTCTGTCCTCAGAAC
3' ss Score
11.73
Exon sequences
Seq C1 exon
ATGGAGGTGATTGTTGGTGACTTTGGGATTGTGGTGGTGCCCCGGGATGCAGCCGACACAGACCGAATCATGAATCACTCCTCAATACTCCGCAAATACAAA
Seq A exon
GTGAGTCCTCCATCCTGCTAGTGCATCTGTGTTATGGCCCTTCTCTGAGAGTCCTGGCAGCTGGAGGAGTGAGAGAGCAAAAGGAGTTTAGTGGGAGGGACTGGCAACTGACTCTGTCTGCTCTGTCCTCAG
Seq C2 exon
AACAACATCATGGTGGTGAAGGATGACATCAACCATCCCATGTCTGTTGTCAGCTCAACCAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157064-NMNAT2:NM_170706:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGATTGTTGGTGACT
R:
TGAGCTGACAACAGACATGGG
Band lengths:
158-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)