GgaINT0035044 @ galGal3
Intron Retention
Gene
ENSGALG00000004642 | NMNAT2
Description
NA
Coordinates
chr8:7861240-7862015:-
Coord C1 exon
chr8:7861914-7862015
Coord A exon
chr8:7861308-7861913
Coord C2 exon
chr8:7861240-7861307
Length
606 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTTCTTTCTCCAACCACAGAAC
3' ss Score
9.07
Exon sequences
Seq C1 exon
ATGGAGGTGATTGTCGGGGAGTTTGGGATTGTGGTGGTGCCCCGGGATGGAGCTGACCCTGACCGGATCATGAACCACTCCTCAATACTCCGCAAGTACAAA
Seq A exon
GTAAGTGGGTTCATACATAGTCAGGGAGCCATACAGTCATGGAATATCCTGAGTTAGAAGGGACCCATAGGGAGCACTGAGCCCAACCCCTGCCCTCGCACACCACCACCCAACCCCTACACCTGTGGCTGAGAGCAGTGTCCCAGTGTTCCCTGAGCTCCGACAGCTCAGGGCCATGCCTACTGTCCCACAGAGCAGACCCTTTCCCTACCCCTGACCCTCCCCTGACACAGCTCCATGCCACTCTCACGGGCCCTGTCGCTGTTCCCCTGCTCTGCTCTGTGCTGAACAAACCATGGCACCTCAGCTGCTCCTCATAAACTTGCTCTCCAGACTCCGTGCTGTCTTTGTTGCCCTCACTGTCGCCCTTTGTTACACCCTTTCCATGAGATTGAACCTTCTTGAGAGCCCCAAAGTGCCCCCCAGCCCCACCGTCACACTGGACATGGGACCTAGAGAGTTCCTCCCTTGGTTTTGCCTCAGCTGCTAACTGGGATCACTAATATGGCCACCAAGCAGCAGATGTCCGTGGCCAACCAGACACAGGTGAGGCAAACACTGATTTTCATCCCTCCCTTTGCTCATCTCTTCTTTCTCCAACCACAG
Seq C2 exon
AACAATATCCTGGTGGTGAGGGATGACTCGAACCACCCCATGTCGGTCGTCAGCTCCACCAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004642:ENSGALT00000007394:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]