BtaINT0102372 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000795 | NMNAT2
Description
Bos taurus nicotinamide nucleotide adenylyltransferase 2 (NMNAT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075486]
Coordinates
chr16:65782132-65782438:-
Coord C1 exon
chr16:65782337-65782438
Coord A exon
chr16:65782200-65782336
Coord C2 exon
chr16:65782132-65782199
Length
137 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTCTCTGCTCTGTCCGCAGAAT
3' ss Score
12.98
Exon sequences
Seq C1 exon
ATGGAGGTGATCGTTGGGGACTTTGGGATCGTGGTGGTCCCCCGGGACGCAGCCGACACAGACCGAATCATGAACCACTCTTCAATACTCCGCAAATACAAA
Seq A exon
GTGAGTCCTCCAGCTCCCTGCTGGTGTAGTAATGTGATATGGCCCTTCTCTGAGAAGCCTGGGGGCTGGAGGCATGAGGACAAAAAAGGAGTTTAGTGTGAGGGACTGGCAACCTACTCTCTCTGCTCTGTCCGCAG
Seq C2 exon
AATAACATCATGGTGGTGAAGGATGACATCAACCATCCCATGTCTGTGGTCAGCTCAACCAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000795:ENSBTAT00000001052:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCGTTGGGGACTTTGG
R:
CTCTTGGTTGAGCTGACCACA
Band lengths:
162-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development