MmuINT0109226 @ mm10
Intron Retention
Gene
ENSMUSG00000042751 | Nmnat2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:MGI Symbol;Acc:MGI:2444155]
Coordinates
chr1:153112142-153112447:+
Coord C1 exon
chr1:153112142-153112243
Coord A exon
chr1:153112244-153112379
Coord C2 exon
chr1:153112380-153112447
Length
136 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTTTCTGCTCTGTTTCCAGAAC
3' ss Score
10.99
Exon sequences
Seq C1 exon
ATGGAAGTGATTGTTGGGGACTTTGGGATCGTCGTGGTACCCAGGGATGCAGCGGACACAGACCGGATCATGAATCACTCCTCCATACTCCGCAAGTACAAA
Seq A exon
GTGAGTCCTCCATCCCCTGCTGGTACACCTCTGAGATACTGCCCTCTTCTGAAAGTTCTGGGAGGCTGGAAGAGTGAGGGGACAAGAGTAGCCCCTGAGAGGGATTGGTGACCCGTTCTTTCTGCTCTGTTTCCAG
Seq C2 exon
AACAACATCATGGTTGTGAAGGATGATATCAACCATCCCATGTCTGTAGTCAGCTCCACCAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042751:ENSMUST00000043313:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGATTGTTGGGGACT
R:
TGGTGGAGCTGACTACAGACA
Band lengths:
162-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types