HsaINT1025020 @ hg38
Intron Retention
Gene
ENSG00000157064 | NMNAT2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16789]
Coordinates
chr1:183261002-183261303:-
Coord C1 exon
chr1:183261202-183261303
Coord A exon
chr1:183261070-183261201
Coord C2 exon
chr1:183261002-183261069
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTGTCTGCTCTGTCCTCAGAAC
3' ss Score
11.73
Exon sequences
Seq C1 exon
ATGGAGGTGATTGTTGGTGACTTTGGGATTGTGGTGGTGCCCCGGGATGCAGCCGACACAGACCGAATCATGAATCACTCCTCAATACTCCGCAAATACAAA
Seq A exon
GTGAGTCCTCCATCCTGCTAGTGCATCTGTGTTATGGCCCTTCTCTGAGAGTCCTGGCAGCTGGAGGAGTGAGAGAGCAAAAGGAGTTTAGTGGGAGGGACTGGCAACTGACTCTGTCTGCTCTGTCCTCAG
Seq C2 exon
AACAACATCATGGTGGTGAAGGATGACATCAACCATCCCATGTCTGTTGTCAGCTCAACCAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157064:ENST00000287713:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGATTGTTGGTGACT
R:
TGAGCTGACAACAGACATGGG
Band lengths:
158-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains