RnoINT0101700 @ rn6
Intron Retention
Gene
ENSRNOG00000027697 | Nmnat2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:RGD Symbol;Acc:1307331]
Coordinates
chr13:70556174-70556484:+
Coord C1 exon
chr13:70556174-70556275
Coord A exon
chr13:70556276-70556416
Coord C2 exon
chr13:70556417-70556484
Length
141 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTTTCTACTCTGTTTCCAGAAC
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATGGAAGTGATTGTTGGGGATTTTGGGATTGTGGTGGTGCCCCGGGATGCAGCGGACACAGACCGAATCATGAATCACTCCTCAATACTCCGCAAATACAAA
Seq A exon
GTGAGTCCTCCACCCCCTGCCGGTACAGCCCTGTGATACTGCCCTTTTCTGAAAGTTCTGGGGGACTGGAAGACTGAGGGAGCAGGAGTATCCCCTGAGAGATCCGGATTGGTGACCTGATTCTTTCTACTCTGTTTCCAG
Seq C2 exon
AACAACATCATGGTAGTGAAGGATGACATCAACCATCCCATGTCTGTAGTCAGCTCCACCAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027697:ENSRNOT00000038183:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(12.5=100)
A:
NA
C2:
PF0146721=CTP_transf_2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGTGATTGTTGGGGAT
R:
CTGCTTTTGGTGGAGCTGACT
Band lengths:
170-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]