HsaINT0118154 @ hg19
Intron Retention
Gene
ENSG00000130558 | OLFM1
Description
olfactomedin 1 [Source:HGNC Symbol;Acc:17187]
Coordinates
chr9:137967103-137982190:+
Coord C1 exon
chr9:137967103-137967648
Coord A exon
chr9:137967649-137982040
Coord C2 exon
chr9:137982041-137982190
Length
14392 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
CCCGCCCCGCCCCTCTCCAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
TGCTTCCCCGCCGGCCGCCGCCCTCCTCCCCGGGAGAGAGCGAGGCGCGCGGGTCCCTCTGCGCCACCCCCGCCCCCGCCCCTTCCGAGCAAACTTTTGGCACCCACCGCAGCCCAGCGCGCGTTCGTGCTCCGCAGGGCGCGCCTCTCTCCGCCAATGCCAGGCGCGCGGGGGAGCCATTAGGAGGCGAGGAGAGAGGAGGGCGCAGCTCCCGCCCAGCCCAGCCCTGCCCAGCCCTGCCCGGAGGCAGACGCGCCGGAACCGGGACGCGATAAATATGCAGAGCGGAGGCTTCGCGCAGCAGAGCCCGCGCGCCGCCCGCTCCGGGTGCTGAATCCAGGCGTGGGGACACGAGCCAGGCGCCGCCGCCGGAGCCAGCGGAGCCGGGGCCAGAGCCGGAGCGCGTCCGCGTCCACGCAGCCGCCGGCCGGCCAGCACCCAGGGCCCTGCATGCCAGGTCGTTGGAGGTGGCAGCGAGACATGCACCCGGCCCGGAAGCTCCTCAGCCTCCTCTTCCTCATCCTGATGGGCACTGAACTCACTCAA
Seq A exon
GTACGTGCATCCAACGCCATTTTCCTCCCTGCCAGGCGCCCGGCCCGGCCCCTCGGGAGCCCCACAAAGTCCGGGAACGGCTCTGGCTCCGCGCCGCCCCGCGCCCCCGGCCTGGGCGCCCGAAGTGCCGGGGTTGGGGAGGGGGCCAGGGCGCTAGGCTGGACCTGGGTGGGAGGGAGGGGTGCAGGCTGACCGGAGACGGCGCTCCTCCAGCCCCGGCTCAGCAGAGCTGACAGCTGCCCCCTTTTTCCTAGGACTCCGCTGCCCCCGACTCCCTGCTGAGAAGTTCAAAGGGCAGCACGAGGGGGTCTTTGGCTGCTATTGTCATCTGGAGGGGGAAGAGTGAGAGCCGGATAGCCAAGACCCCAGGCATTTTCAGAGGTGGCGGGACCTTAGTCCTACCCCCAACACACACCCCTGAGTGGCTCATCCTCCCTTTGGGCATAACGCTGCCCTTGGGGGCTCCAGAAACAGGCGGTGGGGATTGTGCCGCTGAGACCTGGAAGGGCAGCCAGCGTGCCGGCCAGCTGTGTGCATTGCTGGCTTAATATGCAGGGCTTGGGGGGCTGTGGCCACATGCCCGGCAGGAGGTGAGTGAGGAGCCCTGTGGCGTGCTGGTGTGGGGATCGTGGGCATTTCAAACGGGCTTGTCGTACCCTGAACAATGTATCAATAGAGAAAGGTCTCTGCTTGGTATTCTCCATTTTAAAGATGCATATTGGAGCTGGCAGGTCTTGGGGGAGGAGAAGGGCTGTCTGTGAGCGCCGAACTGGGAGGGTTGCTTTGGCACTATGGTGCTCGGAAGAGCCTGCCAGCCGAGGGAGCCGGGCTGCTTGGGAGTGACATTAAAATGCCCTTTCAATGATGCCACTGTGCCACGCTCTGAACTGGGAGACTCTGGCCCTTTGGAGTTGCAAGTCCAGGAAGTGATGGGCAGCCAGTACCTTGGCCCCAAGCCCCAGCTGCCCCTGACCCTTCTTTCCTTCCTCCCTTCCTCCATCTCCCTCAGAATAAAAGAGAAAACAAAGCAGAGAAGATGGGAGGGCCAGAGAGCGAGAGGAAGACCACAGGAGAGAAGACACTGAACGAGCTTCCCTTGTTTTGCCTGGAAGCCCACGCTGGCTCCCTGGCTCTGCCCAGGATGTGCAGTCCAAATCCCAATCCAGCAGTGGGGTTATGTCGTCCCGCTTACCCTCAGAGCCCTTCTCCTGGTGCTGCCCAGACGATCAGCCAGTCCCTCCTGGAGAGGTTCTGCATGGCCTCTAGGAGAGGTTTTCTTGGCCCCAGGAAGGCCTGGTGGAGGGTGGTGGTTGTGCACTGTTGCTGGACAGATGCATTCATTCATGTGCACACACACACACACACATGCACACACAGGGGAGCAGATACCTGCAGAGAAGAGCCAACCAGGTCCTGATTAGTGGCAAGCTGCCCCACAAAGGGCTATGCCTGTGTCTTATTGAGACACCTTGGCAAAGAGATGGCTGATTCTGGGTGGTCCTGGACATGGCCGCACCCAAGGGCCCTCCAAGCCTTAATGGCACCCTGAAGCCTCCATGCCCAGGCCAAAAGATGCTTTTCCTCCCTAAGTTCTCCTCTTTGTGTCTTTTTAAAGATTCCCTGTTCTGGGGAGAAACTTTTGGTTCAACTTCAATTAGAAGCCTTGTCTCAGTGGTGAAAGTATTTGTCCATCCACACGAAGGGTGCTGGACATCCGAACCCCAGCCAGCCCCTGGTCACACCCCTGCATCCTCACACCTTAGAGTCAGGGCCCAGCCAGCCACCTTCAGGACCCTGGTCAGCTCCGCCAGCCCACAGCCTCCGCGGGTCAGGAAGGGAAATGCTGCTGTTTTCTTTGCTGGCCTGGCATGTTCCTCTCTCTGAAGCTGAACCACAGGCTGTCTCAGGGGAATGTGTCCCTTGACTCAGCCAGGAGGCACCTCCCACCCTCATGGTACAGCTCCACCTTCCCCAGGCTGGCTTCTGATAATTGTGCTTTCGGAATCTTGCATTGGAGGCCAGTTATCCTAATGTGTTGGGATTTTGGAAAAAAGCCTCAGCAGGTGAAATCACGTCAACGTTTCTGAGTCTCTGAAGGGGGCAGAGAGTGGCTGGCTCAGCACCAGCACCCGAGAGCCTGGCTACCCTAGTCCCCACCTGGGTGGGCCCCACTGGGGTTATGCCAGGTGACTTTCATCTTTGACCTCTAAGATGGCATCTGGGGTCGGGAATGGGTGTGGGGGCAGGACCAGCCTGCTCTGATTCCAAGAGCTACTGGGGGACATCCATCCCCAAGCATCTTACTTTCTTGATTCCAAAGTTATGCGTTGCGGGTTCCCTGAGCAATGCTGCTCATATTTGTGAGTGAGTGAAGAAGCATGTCTGGGCTTCAGGATAGGGTGCTGGAGCTGCCTGGTGTCTGCCTCCCGCTTCCACTGTAGGTAAATTGCTCCAACAGCCACATCCTTGCTTTTAGCTCCTTCCAAGGGATGGACATGCGATTCTAGGGCCACTGTGTTTCTAAATGAGCATACGTCGACATAAGAAGATGTCAGAAACGCCTGGATCCTACCTGCACTTAAGAAATGCTGCCTGGAGGATTCAGGCGGACAGGCAGGGGGAGTGGAGCACATGGCGGGGCCATCTGTTCTCCCGACAGCTTACTTACGATGAGACACTCAATCAAACACCAACCGTTGATGGATGGCCTACGACACGCAAGGCTGTGGGGCCAGGTGAACTTTGTCCTCAGACAGAAAGACATTTCACATGGTCTTGCTCTGTGATTTTCAACAAAAGACTGGTATTTCATGCTCTTAGAGAAGCAGGGTAAAGTGGCATGGTACTGAGCTTCCGGGGCAGGGTCCAGAGGCATTGATCTCTGGGCCTTGGGGAAGGTGGGGCAGGGCAGGGACTCCCTGGGCTCCAGGCCCACCGCCACACCCCCCAGGCTTCCCTTCAGAGTGAAGAATGTTTTTTGTACGTGATAGGGTAAAAGGGGCTGGGAAGCTTTGTAGCAACAACCTTGAACCCAGATGGCCTCATTCTCACCCCGATCCCACCAGACACTGGCTGTGTGACCTTGAGAAAGGCCCTTTAACCCCTCTGAGCCTGACCTTCCTTGTTTCACAAGGAGGATTAAACAAGATGATTCTTGAGTAAAATCCCTTCCTGCTACAGACCCCCAACCCCATTCTTTCCTTGGCTCACTCATCCTCTCCTTAGACAAGCATTTCCTGGGTACCAGCTGGTTAGATTTAACTCGGTCAATTCTGGGCTTACAATGTTAAGTGAGTCCAAACCCTTGCCGCTTGGCACCTGGGGCCGGCTTGCTTTGAGGGAAGACCCCAGGCTCTGCCATAATCATGTGTTTCAGTGGCAAAAGAAGTGTCTGCACCGAGTGCTCTGGGTAGGAGTTGGGGAGTGAGTTCTGTTTTGGAAGCTGGAGGCAGCTCTGGAGAAGGAGGATATTTGATCTGGGTCCAGGCTTGCACCTGGGTCCACTAGTGAGCCCGGGGGAAAGAAGAAGAGGACAGAGGCTGGGTACGGTGGCTCATACCTTTAAGGCCAGCACTTTGATCACTTGAGGTCAGGAGTTCAAAACCAGCCCGGCCAACATGAAGAAACCCCATTTCTACTAAAAATACAAAAAATGAGCAGGGCGTGGTGGCAGACGCCTATAATCCCAGCTACTCAGGAGACTGAGGGAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGACTGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCTGTCTCAAAAAAAAGAAGAAGAAGAGGACAGAAATGGCTGCAGACAGAGGCTGCAGCAGGAAGAAGGGCCTGGAAACCCTGACTCTCACATCCAATGCTCAATCCACGTGGGTTGAGGGTATTTGAAGTGTTTGAAGATGGAAGCGGAGCTCTCCTCATTAGCCACGCATCCCCAGGCCGGGCCTGGCCTTTCCTAAAACATGACACCCCTGGATGCCCCTGGTGGGGTTCAAGCTGTCAGTGAACACAGAACAGGCTTGAGTGGCAACCGTCACTGTGACTGTTTGCCTTCAGGTTTTATTGAGTGACTACTGTTTGCTGGGTCTCGGAGTTGGGCCAGCTGTTTGCCAGTCTAGGTGCCTGCATTGAGAAGTGGGCAGACCCGGGACTGCACTTGGGGAGTTGTGGGTTGGTGTGAACAGGGCAGACGAGAAGACCAGGGAGGTGATGCTGACTTAGGCTTTCAGAGAACCCCAGTGAGGCCCATCCCTCTGAATCTGTTCCTCATCCCCCCATTTAGCTCATTCTAGAGCTGAAGACCTCACTTCACTGCCCTGAGCAAATCCAACAAGTAGAAACGGCTAAACACTTTTACCTGCTGCAACCTAAGCTTGGGCCAGGTGGTCTGGATGAGCTGTCTTGTCCCCCTGCCAGGCCCTCTTCCCCTCCAGCTTCTCTGCCCCCTCTGTTTTGGACTTGCTGGGAGGATACAGTGTTTGTAGAAGGGGATGGAGTGCACGGGTAGGGGGAAGAGTTCAGGTGAAATTGGGGTCTTTTCCTAAACCCATTATTTCAGAATACGTGGAATTCATTCAGTCTTTGCACCAAAGTTGGCTGTGGCCTCTCAGGCTGGCAATGCCTCTGGACACACGGAGGGAGAGGGGCACCCTCCCCTTTCCCATTCCCGGGCTGCCTCCCCTGGTGGAGAGGCTCCTGACACCAGGGGCGCTGAGCTGTCAATCCTGCCCATGAGACAGCTGCTCCGTCTCCTAAAGCAATTTGCTTCTCATTCCACTGACTTCAACCTTCCCCAATCAGAAGAAAGGTAATTTCCTGCCTTGGGTTGTATTTATTACTAAAGTTATCAGGCCCTGTAATCAGTATTAACATCACCGTGTAAAGTAATACAAAACTAATTACTAGCTAAACTGAATTAGATACATGGCAACCACGAGCTAGGCTGACAGGGCGAGCAGCCAATTTCCAGCTCTGAAAGATTCGTCCTGGACACCCTGCACGCTCGGAAACCTCAGCGCTGTCCCGACTGGCACCGCAGGGCGACCGAAGGGAGGGGAAGAGAGAACAGGAAGTAAAAATGCACACCTCTGAGTTTTTTTAGATTATTAAAATAATAATCTAAATATTATAAATAATAATGATAGTAAATAATATACTATATAAGATAAATAATGTAAGAAACTGGAGCCCGCCCGGAGTTAAAGCCCCAGGAATCCCGCCAGTGGCGAGGACTGATACCGCATGTCACGAGTGTAAACTTTATCATGTTGCGGCGGTCCCAGCAATCCTGGGCAGTTGTCCCCATTCTTGACCTGAGGACACACAGGCGTGGGGAGGTTAAGCAGCCTGCCCATCCACCCAGCACATATGTGATGACCCCAGATGGTGCTCTAGGTCTGTCTGACATCTGAGAAACCTAAGTTCTGGTGCTTGTTAAGACAGAAAGAAAATGCAAAGTCGAAAAACAGCGCAGTGTCACCGAACACCAGTGCAAAGGAGGTGCTGGTGCTGCTGCCGGGTCGCCGACCTCTGTGGAATGCACCACAGAGCCCATCAGCTGTGCCTTTCCGACTGTGTGGACACGTGCACGGCCGGCTGCTGACCTTGAAAACGGGCTTTTGAAGGAGAAAGCAGGGCAAGAAGGAGGGGGTCCACTTGTGGTTTCCTTGCAACCCCTGAGGATCAAAGACCCCAGCAGGCCCGTCCACCCCTTGGAAACGGGGATGCATCTAGGAGTGCCTGCCCAGCTGCCTCAGTTCTCTGGAGTGTAAGGTTAGGGGTTACGTAGGCAGCCCTGTGCCCGTTAAATGTCTCAGCATGTGCATGACAACTTGAGATCCAAGAAGTCAGAATTAGGGGCCAGGCGCACTGGCTCATGCCTGTGATCCCAGCACTTTGAGAGGCCGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGGCCAAGAAGTAAGAAATAGGATCTACAGGTCCTGAGCTAAGGTGGCCTCTCAGTGAGGCTCTAAACTGCCCGACACGTGCACCCGACACGCCTGCGGGTCCGGTGACCCCCTTTGTTGCACCTGGCATGCTTTGCACAAGGTGGCTGGAGGGGCTGCCATGGAGAGAATCCGCTGCGTTCGAACTGACCCGTCCTCGTGTGTGGCTGCTCACCTGGAGAAGGTTTCCTGTCCCTGCTTCTTCTGTGCTCGTGTCAAAGCTCACGCCCCTGCCTGGGCTCCAGCTGGTGATGGCAGCTGCAGTGTTAGCAGACCTGCTCGCCCCAAAAGGACATCCCAGCAGCAGGGATCTTGCCCGTATATTCCTTATGCATGGTTCAATGACAGTTAAAATCTGATTGGAGAGTGTGTAGCCATGAAAAGTTGAGATGAAAGAGTGTAAGGGGGAGATGGGAATGAGGTCGGCTCCCCAGCCCTTGTCCACATTCAGATCAGCAGTTCACAGCATCGCTTTGGGCCGTCCCTAAAGTGGTTCCATTCCAGCTAGTGGTTTTAGGTATACAAGTTGTCTTCGGGGAGTTTAAACCCTGCCGCGGGGATTTCCCTACCATACAAAATGGCTCTCCTGAGTGGTGCTGAAAAGAAAGTCTCCCCCACTTGCTTCTGGTGATGCTTCGGGGGCCTAAGAGTCAAAGAAAGAACATGAGTGTATCGTAAATAACTTTACTCCATGCACTGAAGGATGTGGTTTTTGACAGTGCAGTGGGACTCAGAAATGGGGAGCCAGCCATTTACCAACAATTTGGCTGTCAACTTGAGTCCTTGAACCCCTGCCCAGCCTCCTTCCCAGCCCCAAATATGCACACACAGGTTTCCGTTCCCAGGCCACTCAGCCTCAGCATCTTGTCCCACAGATGCACAGACTGAGTCAGCTCTGAGTGGCAGCAGGTGAGGGGTGTTGACGGACCCAGGGGTGCTTTGTTCCATCAGCAATACAAAGGATGATGAAACAGGAGATTCTCCCAGGGGCTGCAGCAGTCTTGGTGAGAGGTGGCTAAGAACGTTTCCGAGGCCAAGTCCAGGCTCCACAGGGCAGGCCCCATCAGTAATGCCCGGGAGCCTCCTGTGCAGAGGCCGGGTGTCGTCTGGATGCAAAGAACTTTGTTTGGAATCTGGCAGCACCAAATCCTTGGCTGTAAGCAAATGGTGCCACCTGGGGCATTTTCCACATTCCCAGCTGGACCCTGGGATTGACTCTTTGATGTTTCTCATCATGATGTCACCTTTGAATTCATGTCAGGATCAATGACTGATTCCACAGAAACCGGGCTGCCTTTCCCAATTAGTTACGGTGAGTTTCCTCACCTGGGAAGTAGGAAATGATTATGTTTGTGGGGTCCCTGAAAAACGTGCATTCAGCCCAGAGGGTGACGTGTCTGCTGAATTGTCTTGTCCCTGTTCTTCAAAGTACCACTCCCAGAATTGGCCTCTTTTCCATTCGGCAACTAAGGGAATACAGAGCTGTGGCTTCCCTTGGCCTGGCTGTGGCCAGGCTGAGACGATATCCATGAAAGAGGCGTGGAACCTGCCAGGGAGAGTGCGGAGGGTGCATGAAGGGTCTGGGGGGATGGGGGCCGTGGACAAGTCAGCTCTCTGGATGGACAAGGAACTAGGACTGAAGAGCTGGACACGAGGCCAACTGCTGAATGGAGGAAACGTCCCCCAGCAACAGCCATGGGTCTGTGGGATGCTCTCCCCAGGGCAAGTAGCTCCCCATCACTGTCACTGGGGGACTTGAAGAGCTGACACTGAGGGAAAGGGGGAAGGACGATACCTCGGAGGAAGTTGAATCTCCTGGGTCGGCAGCTCAGGCCAGCCGTGCTCACAAACCCCAAGCACAGTGGCTCATGATGGCAACGGTGTGCATAGGGCACAGGCTGCCTGGGGGCACCTCTGGCTCACATGTCCTGTCATTCGAGGGCCCTGGGCAAGGGAGGGGCCCTCTCTGGATCTGTTTTCCTCATGACAGAGGCAGAGAGACAGGGTGTGACTGAGACATTTGGCTCTGAAAGCTGCTCAGTCGTGGCCCTTAGCCGTTCTCCCTCCCGGGGCCAAAATCGCAGGTCACACAGCCACGCCTGATGCAGGTGGTGTTTGGGAGACTGTCAGCTTATGGGAGGTGCTGCCAGGCACAGGGAGCCGGGCCAGGATGGAAATCCTCTCCAGGGAAGGGGGTGAGGAGCAGTTACGCCTCCACCCATGTGTGAACCCAGAGGCCTCAGAGGAGGGGAGTACAGGGAACACTTGGCTCAGAAGACCCATGCTGGTCTTCTGTGGCTGCCGAGAGGGAGTGCCCAGGGGACCTGTGGCTCCTCCCATTCTGCCTGGCTTGAGGCCAGGTCCTTTCCTTGCTCCTGGAATGTTCCAGCACAGAAAGGGAATGAAAAAGCTACATACAACGTAGAAAAAGGAGAGGTGGCTCCATGTGGGACCTCTCTCTGTGTCTCTTCTCTCTCTGTGTCACTCTATCTTTCTTCTCTCTCTCTCTTCTCTCTCTGTCTCTCATCTCTCTCTCTGTCTCTCCTCTCTCCGTCTCTTCTCTCTCTCCTCTCTGTCTCTATTATCTCTCCTCTCTGTCTCTCTTCTGTCTCTCCTCTCTGTCTCTATTATCTCTCCTCTCTGTCTCTCTTCTCTCTGTCTCTCCTCTCTCTGTTTCTCCTCTCTTCTCTCTCCTCTCTCTCTGTCTCTCTCTCCATTTCTTTGTCTTCCTCTCTGTCTCCTCTCTGTTTCTTTGTCTTTCTGTCTCTCTGCCTTTGTCTCTCTCTCTCTCTCTTCTTCTCCCCTTCTCCCTCCCTTTCTTCCTCCCCTCCCCTTGTTTCCCTTCAAGATATTTGCCAATAGCCTGAGGAGAGTATGCGTATTTTTAAACAGCAACCGGGCATCCAAACTTTGTCCCTTGAGGGCATCCTTTGCCAAGGAGCATCGGGAAGTGGCCCAGAGACCTGCTTCCCTCCAAGCAGCCACTCCTGGCTCTGGGACCTGAGTAGGTTTGCATCCTGCGGACCTCACTGTTCTGACTGTGGGTGTCAGTGGTCGTCTGACTGTGGGTGTTGGTGTCGTCTGTGCCCTATCAGCTCACCATGTGGCTGTCCTAGGGCTTCTCGAGGTGATTCCCCAATAGCCCACGTGTGTCCGCCTCTTGTAAGGTCTATAGCAAGCTGGGCAGGAGCACCCTCTCACACTTGCGTCTTCTGAGCTCTGAAGCCGGGAGATGCAGAGGGGGTGTGCTTGTTTTTATGTGTGTTGATGAATTTGTACAGAGTCCACCAAGGTCAAGGCCTGTAGGGGGCTGGCATGAGGATAGAGACGTGGCTGTTCTAACCTGTCATGACAGGGAGGGTGGTGCAGGCTCGTGCCAGGACTCAGAAAGGGGTGGGCAACCTCCTGTCCTTCCCACGAGCGTGGAAGGCAAGGGCCCATGAAATGTCTTCTGGCGGCCTCTGTGGCTCGTGGAACTGTGCGGACAGCCAGGGCTGCTGTGGCCATGCAACTCATGCCACTTCTGGGGCTCGTGAGATTTAACTATGGCCATGACATTTATAAGACGAGGATGCCACCATGTGTATGGGCTTAGCCCTGGAAATAGGCTGTCACCATATGACCTTGGACAGGTCTTATCATCTTTCTAGGCCTGAGATTCCTCATCTATACAGTGGAGTCAATGCCACCACACCATGCACTTCAGTAAGGATTGGGTGCCAGGCATGGCAAAGCCCCAGTGCCACCAGGGGCGCAGCACCTGCCCCATCAGCATCCGTATGATTGTTCAGAGCTGCAGGTGTGATGAGCCCTGGCTTTAAGAGAAGTCGTGAAGAAATTGGGATTGAAAGTCCTCTTTAGGAACACTTGGTATTGCCTGGCGCCATGGATCCCCTAATCCAAATGCCTTCATTCTTCAACGATCCATACTTTCCTTCTGGAATGCTCCATGGCCTTCTAAATCCAATTACACTTACTCAAGCCTTATCTGACGACCCTTTCAAAACCATTATGCCCACTGAATCACAGATTTTAGAAACTGGACAGGACAGTTTGGAGCAGGTGCAGGTTGGAGCCGCTCAGGTGCAGGTTGGAGCCGCTCAGGTGCAGGTTAGAGCAGTCCAAGTGCAGGTTAATCTTTTACTTCGTTAAATAAATAAATGTCTATGGCTTCTGAGATGGCCTGACAGTTTTGTGGATTGGATTGGGTTGCATTTGAATTTGTTCCCGCAGAACAAGTGGTCCTTGTCCTTCCGCAGCGGGAAGCGGCGTGAGTGATCTGGACAGACACGGCTTGTGGCCTTGAATCGGTGTTAAACATGCATGGCCAGAGGAGGGGGGCGAAGCCAGCCCAACCGGACTTGTGTCTCCGCCTGGGCCCAGTCTGTGAGCCGGGCCTGCAGTCCCAGCTTACACTGGGAGATGGCGCCCTTCCCCAACAGTTGGAATTTCCTGGCATCCGACCCAGCCCGGCTGCCTGAGATTACAGCATTAATCAGAAAAGCAGATCTGAGGGGCTCATTTAACTAGCGGGTCTCACACCCAGCACTCAGGCCAGGATCATCTTGGCTGCAGCTGAAGTCTCTTCAGCCGAGGACTGCGCACACAGAGAGAAAAGCCCCAGGAAGGCGTTGTTCCTCTCAGGCGGGCGCCAGGGAGGCGCGCTCCTTCCGGCCCGGCGTCCGTCTTTCAAATCCCATCCAGGAAGGGAGATTAATTTTCGCCCAGGCAGAGAAGAGTGTAGTGAGTGATCTGGAGGATTCTTTCCTTCCCAAATGGCTGGGAAAGCTTAATGGAAGGCCCCGGAGGAAGTGGCTTTCATCTCCGATTAGAAGCCTTCTGTAAATGCAAAAGCCCTATTAACGTGTTTGACCCAGTCAGGCCTGCGCTTCAGGTGGGACTGACACGCGTGAGTCCTGCTGCGGTCGCCGCAGAGGGCCGGGAAGAGGGGCAGCGTGCGCCACTTGCCCTGCCTCTGTGCCTGGGCGCCATGACTCGAGCGCCACCCCTGAGTCAGTAAGGACACCCCCCAACCCACACCCCTCCACCACAGACCCCAGTCCCCGCCCCACACACCCACCTCCCCAACACCAGGTTCATGGGCGTGGTCCCTTCAGCTCCTGAGGTCCAGGCCTGAGCCCCAGACCTTATGCAGCTCCTGCCGGGTGTGCGCCCTCCCAGGGCCCTCACTGCGCACCGCGGGCCACGGCAGACCACCCCAGCCCCCGCCTTGCTGTGCAGGTGTCAGGAGTGCCGGTTGGCTCCCTTCCTCCCAAGCAAGGCCTTAGGGCACCGCGGCTGCCCTGGGATCGCAGGGGCGCCTTTAGCTCTCCACCGATGCCCCGACGCCCCCCTGGCGCTGGAGGCCCTCGCGAGTCTGGCTGCTTTTCGGAGCCTGCCCTGCCTGCTGGGTTTCAGGCGACGGCCCAGGCTGGCTGGGACCCTCGAATCACCGCGGAAAAGGGCTCCAGTAGGCAGGACGGCGCCGTCTCTCTGCCGGCAACCTTTGCCCCAAAGCGGACCCTCTGCGGGGATCGGAGAGGGATGCCCCGGCGTGAGGATGGGAGAAGCCCCGGGACGGGAGGGCCGCGGGCCGTGCCCCCAGCTGGAGTCCCCGCGCCGCCGCCGGGTATTTTATGATCTGGGGGTGGTGGTGTGTCCGTCTCCTCATGTCACCCTGATCCCAACTCCTGGGCGGACTGGAGTTTGCAGACCTCGCTGCCAGCAGCCAGGGGGCGGCGGGGAGCCGAGCGAGAGGAAAAATCCACCCATTTCCTGGGCGGATTGCGTCGGTCCCGCCCGGCCGAGCCCCGCCTCCCGGCCGCGGCCCCCGCGCGCAGCCCGCGCAGCGCTCAGAGCCGGACGGCGCTTCCCGGTGGCGGCGGAGGAGCCCGGAGGGACGCAGCCGGGCAAGGCAGGGCGCAGGGCGGGCGGCGCGAGGCGCAGGGCGCGGCGGGCAGAGGCCACCTGGCCACCTTCCCTGGCGCCCGGGGAAGGCGCGGCGATGGCCGGGGCGCGCGGGGCGGCGGCGGCGGCGGGCGGGCGGCGGCGGGCCGAGGGGGCGCGGGGACACAGCCAGGCGCCCCTGCCCGCCGCGGTGCCCGCCGCCTGAAGGCCGCCTGGGCGCGGGAGCCGGTGCCAGCTCGGAGCGGGCGCTGGAGGCAGCTCGAGGCGCGATGTCGGTGCCGCTGCTCAAGATCGGGGTCGTGCTGAGCACCATGGCCATGATCACTAACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGCCTCAACACCACCAAGCTCTCGGCGGCCGGCGGCGGGACGCTGGACCGCAGCACCGGCGTAAGTGCGCCCGCCGGCCGCCTTGGCGCGGCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCGGTCCGGAGCCCCGGGCTGGGCGGGCGCCGCGCGGGACCCGAGTCGCCCAGGGAGGCGGCGGGGAGCAGGGCGGGCAAGGGCAGGCGTCGCGGGCCGGCGCAGCGGTGGCGACCCTGCTCCCCGCTCCCCCAGCCTGGGCCACTCCATCTCCGCCCGCGCGCCCCTGGGGCGGCGTTTCCTTCGTCTGGGCCCCTCGCCGCGGGGCCGGGGGAGCTTGGTGGGTTCTCGGAGGCTTGGAGTCCTGGGTCAGTAATCATGAGCCCCCCATTGAAAAGGTTAGGAAACTAAGGCTGGGGACTTGGGGACTTGTCCAAGGTCACACTCAGCGAGTGAGGGGTGGAGCCGCCGCTAGACCCTAGTCTGGGCTCGGTCCAGCGGGGACTGAGCCCGCCCTAGTTTGTAAAAGCCAGACTGGCCGGACCGGGCTGGGAGTGGGGCCCCAGCCGGTGGGCTCCGGAGCTCCTGCCCGCGCCTGCATTCCCAAAGTCCCAAGGCGCCCTTTCCTCCCCAGTCCATAGGAGGGTTTGTTCCTTCTCCTCCGAGGACGGTGCCGAGGGGCTTGGGTGGGGCCCCTGGGAGCCTGCCCTTGGGCGCTCACCCCCTCGCCTTTGCCTTCGTCTTCTGCGCGCACCCCTCCCTCCTGGCCTCTGAAATTGAAATCGCGTCTCCCTCTCGAGCCTAGCGGGAGGGGAACCGTGGCCGGGGCTGCTTCTGGGCAGAGCTGACTTAGATGGCTGAGCGAGGCTGAGCTGAAACCGCCACCCGGAGGGCCGCGCGGGGAAGGGGCCGCTGCCGGGAAGGCGCGCCCCAGACCACTGGCCCTTTAGGCTGAAAGGAGAGGTGAAGGACGTGAGTCTCCCTCCCTCTCTCTTTTTGCTGCCAGGGGTTTAGTGCCCTGCGAAGAGGGCTCCGTGGTGTGGCTCCCTCCTAAGACCCCTCTTGAGGCCGCCCTCCCTGCTCCTTCAGGAATCGGAGGGCGATTCCTCCATGATGACTTTGTTCCGGCCTGCCGGTCCCGATCTTCTGGGGTTGGGAATGAATGAGATTAAAGATATGACTACTATAGATTCTACCCGCCCAACTTCTCCTCCCCATCTTCATGCTAAAAATAGCAGAGAGATGACCTGATGCCACCGGAGGGGAGCGTGCTCAGAGACAGTAGGGCCAGCAGCAGGATGGAGCTGTGTAGGCTCAGGAGTGCCCGCCCCGGTACCTGGCAGGGCTGGGCTGCAAGGTTAGACCAGACATGGGCAGCTCCGGTTTCTTTGGTGATCTTTGGGCAAACCTCAGGACTGAGGTTGGGGGTGACCCCTGCACAGCATGTCACCAGCAATTTGGCGACCTCCACCAAATGGCTCGTGGGGGGAGCCCACAAGGAGCTGGAAACCTAGTGTTTTCTCGGGTCGGTCTGTGCCACGCTGCCGGCTGGGAGGTTGCTGTAGCTCGGGGTTCATCACAGCTCTGGGCGAATAGGCTGCTGGATCTGGGGCTGTTACAGTGGGTGCTTCGTCTGCAAGTGTCAGGGAACGGCAGGGCGAGGCTTGGTGGTGCCAGCCACCCGTGCTTGACTTACGGGAAGGATATCCTGTTTCTGAAATACGTGCCCGCTGCAAGCCACCCAGCGTTTGCTTTCCTGCCTTGCTCCTAGTCCAGCCTGTGGCCTCCAGTTGCCCCTCCCATCCACCCAGCAGATCAATTTGGCCAGACGACAAACTCCAGACATCCCTTGAGTTGAACTTAAATTTTAAGAACGTAAAGGGTCTTGCCTCTTTGACATCCTTCCAGCCCTGAGCCCCCTAACAGGAGACCTGTGCCTCTTTGTTCCCAGGGACCCTTTCTTCCCTTTGGGTCAAACATGTCTTGGGACCATTTCCTCCCATCTTTTCCTTGGGGGTGGATGTGGACAGTTTCCCCTGGTTGTTGGCTCTGATACACAACCTCATGGTCTCCCTTTCTCTCCTTCCCTCTCCCTTCCCGCCCCGCCCCTCTCCAG
Seq C2 exon
GTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGCGAGGGCAGGTGTATCTGCACAGTGGTCGCTCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130558-OLFM1:NM_006334:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.180
Domain overlap (PFAM):
C1:
PF0081212=Ephrin=PU(6.4=21.9)
A:
NA
C2:
PF123083=Noelin-1=PU(22.9=94.1),PF101864=Atg14=PU(12.6=94.1),PF0154011=Lipoprotein_7=PU(11.8=82.4),PF100464=BLOC1_2=PU(23.6=76.5),PF0149614=V_ATPase_I=PU(11.3=82.4),PF041569=IncA=PU(11.9=88.2),PF131661=AAA_13=PU(11.0=82.4),PF045827=Reo_sigmaC=PU(11.7=88.2),PF060097=Laminin_II=PU(15.9=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)