MmuINT0113070 @ mm10
Intron Retention
Gene
ENSMUSG00000026833 | Olfm1
Description
olfactomedin 1 [Source:MGI Symbol;Acc:MGI:1860437]
Coordinates
chr2:28205659-28208227:+
Coord C1 exon
chr2:28205659-28206099
Coord A exon
chr2:28206100-28208077
Coord C2 exon
chr2:28208078-28208227
Length
1978 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
CCCTGCCTGCCCTTCTCCAGGTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
AACCCGGTGGCCCTTCTCGAGAGCGGAGCGCGCGGGGACGCTGCAGCGGCGGGCAGCGCGGGCAGGCAGCGCGCGCCGGGCAGGGCCGCCTGGTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCCAGTGCGCACAGGGAGGCAGAGACCGGCGGGCGGCGGCGGGCAGAGGGGGCGCGGGGACGCGGCCGGGCGCCCCTGCCCGCCGTGGTGCCCGCCGCCTGAGGCTGCCCGGGGCGCGGGAGCCGGCGCCGGCGCGGCGCGGGCGCAGGAGGCCACTCGAGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGTCGTGCTAAGCACCATGGCCATGATCACCAACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGCCTCAATACCACCCGGCTTTCGGCCGCCAGCGGCGGGACGCTGGACCGCAGCACCGGC
Seq A exon
GTAAGTGCGCCCGCCTTGAGCCCTCGCGGCCCCTCCTCCCTCCTGCCTCCTCTCGGGTCGAGCCCCGGGCTGGCCCGGCGGTGCGGCACAGGATGGGGTCACCCTGGGAGGGAGGGTTACAAGGGCCGGGGTCACGAGCCCACCCTCTGCCCTGCAGCCAAGCAGTGCCTTCAGCTGCGGCCGCCACTCGCACTCTGGCGTTTCGGGGCGATGCTTTTTGCTCCCAGTCCCCCGGAGGGGCTTGAGGACACCTGCTTTGGTGATGGTGGGAGGGGTTCAAAGTCCAGAGTCCTCGTTCACTAATATTAGAAAATCTTTCTTTGCAAAGCTTAGGAAACTGAAGCTAGGGACTTGGGGACTTAGCCAAGGTCACTCAGCAAGTAAGGGGTGGAGGTGCTGCTTAAAACCCTTTGTGGGCTAGGTCCAGCCAGGACTCAGCTCGCCCTACTTTGTAAAAGACGGACTGGACCAGTGCAGAGTGGGGCCCAAGGCAAAAGACCAGAGCTTGTGATCTCACCTGAGCCCCCCAAATCCCAAGGGACCCTTCCGGTCTCATCTCGGTTGGAAGATCTCAGCGTGCACTCTGGAGGAGGTTGAGAGGAGCTGGGCGGGACCCAGCTGCCGATCTGTCTTCACCCACCCCTCTCTACTGGCCTCTGACACGGAAATCGAATCTCCATGTCATCGGCAGCCTGCGGATGGGGAGCTATGGCTGGGGGTTGGGTGGAGGGTCTGGATAAGGCTGACTTCCATGATAGATGGAGCAGGCTGAGCAGAGACCACCCTTAAGTCAGGGGCCACTGGAAAGGGACCCTGGCATAACCTTCTCAGTGGAAAGGACAGGTGAGGGACCATTCTCCTCCAGTTTGATCCCAAGAGCTGGGTGGTGTGACCCACCACCACCACCACCACCATCTATCACTCTTGTAGGGTCTGCCTCTCCTGTTGTTTTAAAAAGAGTTTTCCTAGTGCCCTGGTACTGGGAGTGGTGTCCCACTCCTTAAATCCCAGAGGCAGGTGGGTCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCCTGACATTCAGAGCTGCGTAATGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGCCAAACAAAAATATCACCATGAGTTTCCCTGATAAGGATTTTGGATGCTTGTGTCCTAAGCTGGATGAATGAAATGAAGTATAGCACTACCTGCTTCTCTGCCTTCTTCCCATCCTTATCTAAAAATAGCAGGGAAGTGCAGGATGCCAGGGAAGGGCTTGGAGACTGGGTAGGCTGCAGTGGCTGGAGGGCAGGGGTCATGGTGGTGTGTATGCAGGAGCCTTGGTGGCTTCTGCCCCTGCTGTGTATCTGAAGGTCAGGGTCATGGGTGGTATAGAAGGCCTGCAAGGTGAATCCAGCCACTCAGTTCTGGGTCCTTGGTGGTCTTTGGGCAAACCCTCAGGATTGAGGTTAAGGGTGACCCTTACACAATATATTTGTTGACATCCACCAAATGGCTAGTGCGTGGGGGAGCTTCATGGAGTTGGAAATCAACATCTGAGCCAGGCTGCTTTTGTTCGGGAGACAACACAGCTCTAGGGTTGCTGCTCTCAGTTCTTAGGTGCCGACTCAGGACTCATAACAATTGTGCTTGTCTCCAAGTGTTAGGGAACAGGAGCTCAAGGCTCGTCAGCATCTTGCTGGAAGAAGAGGGTATCTGATTCCCTAAGCCATTAGCTACTGGTTTCTTATATGGCCCCCTCACCCAACCTAGTGCATCGGCGGCCCCTCCCACCTCCCCCGGCATTAATTTGGTTAGAGGTCAAAACTCTGAGCACCCAGGGTTGAACATGCATTTTAAGGCACTGTTCCTCTCCAATTCTTTGAGACCTCAGCACCTGGGTACAGGTCTCCCTCATCCTCACATTCTCTCTTTCTCTCCTCGTGCCCTTCCCTGCCTGCCCTTCTCCAG
Seq C2 exon
GTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACAGTGGTCGCCCCCCAGCAGACCATGTGTTCGCGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026833:ENSMUST00000028177:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123083=Noelin-1=PU(46.5=94.0),PF0154011=Lipoprotein_7=PU(33.0=70.0),PF093255=Vps5=PU(12.3=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGGAGGCAGAGACCG
R:
TACACCTGCCAGCTCTCCTC
Band lengths:
345-2323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types