RnoINT0105260 @ rn6
Intron Retention
Gene
ENSRNOG00000009862 | Olfm1
Description
olfactomedin 1 [Source:RGD Symbol;Acc:620320]
Coordinates
chr3:6773813-6776356:+
Coord C1 exon
chr3:6773813-6774253
Coord A exon
chr3:6774254-6776206
Coord C2 exon
chr3:6776207-6776356
Length
1953 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
CCCTGCCTGCCCCTCTCCAGGTG
3' ss Score
11.42
Exon sequences
Seq C1 exon
AACCTGGTGGCCCTTCTCGACAGCGGAGCGCGCGGGGACGCTGCAGCGGCGGGCAACGCGGGCAGGCAGCGCGCTCCAGGCAGGGCCGCCTGGTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCCAGGGCGCAGAGGGAGGCAGAGACGGGCGGGCGGCGGCGGGCGGAGGGGGCGCGGGGACGCGGCCGGGCGCCCCTGCCCGCCCTGGTGCCCGCCGCCTAAGGCTGCCCGGGGCGCGGGAGCCGGCGCCGGCGCGGCGCGGGCGCAGGAGACCACTCGAGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGTCGTGCTAAGCACCATGGCCATGATCACCAACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGCCTCAATACCACCCGGCTCTCGGCCGCCAGCGGCGGGACGCTGGACCGCAGCACCGGC
Seq A exon
GTAAGTGCGCCCGCCTTGAGCCCTCGCGGCCCCTCCTCCCTTCTGCCTCCTCTTGGGTCGAAACCCCGGGCTGGCCCAGCGGTGCGGCACTGGATGGGGTCACCCTGGGAGGGAGGGATGCAGGGACCGGGGTCACGAGCCCACCCTCCGCCCTACAGCCTAGCAGCGACTCCAGCTGCGGCCACCACCCGCACTCTGGCGTTTCGGGGCGATGCTTCTTGCGCCCGGTCCCCCTGAGGGGCTTGAGGACACCAGCTCTGCTGGTGGTGGGAGGGGTTCAAAAGTCCAGAGTCCTCTTTCACTAATTTTAGGAAATCTTTCTTTGCAAAGCTTAGAAAACTGAAGCTAGGGACTTGGGGACTTAGCCAAGGTCACTCAGTAAGTAAGGGGTGGAGATGCTGCTTAAAGCCCTTTGTGGGCTAGGTCCAGCCAGGACTCAGCTCGCCCTACTTTGTAAAAGGCGGACTGGACCGGCCCAGATCAGAGCTTGTGATCTCACTCGAGTCCCCTAAATCCCAAGGGACCCTTGTGTTCCCATCCCGGTTCGAAGATCTAAGCATCCACTCCGGAGGAGGTTGAGAGGAGCTGGGCGGGACCCAGCTACCCAGCTGCCCATCTGCCTTCACCCAACCCCTCTCTACCGGCCTCTGAAATGGAAATCACAATCTCCATGTCCTCAGCAGCTTGCGGGTGGGGAGCGGTGGCCGGGGTTTGGGGTGCAGGGTCTGGGTAAGGATGACTTCTGTGATAGATGGAGACCACCGTTTAATGAGGGGACCTGGCCTAACCTTCTCTGTGGAAAGGACAGGTGGCAGGTGACGGATGAGTCTCTGACCCAACTGCCACCATCAATGACTCTTATTGGGTCTGCCTCTCCTGTTGTTTTAAAATGAGTTTCCCTAGTGCCCTAGTGCCAGGAGTGATGTCCCACTCCTTTAATCCCAGGGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGTCCAGCCTAGTATACAGAGTGAGTCCCCTGACATTCAGAGCTATGTAATGACACATACATAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAGAAAAGAAAAATGCCAAACAAAAATATCACCGTGAGTTTCCCTGATAAGGACTTGGCGTGCTTCTGTGTTCTGAGCTGCTGAGGTTGGATGAATGAAATGAAATGAAGAATATCACTACCTTCTTCCCCATCCTTATCTAAAAATAGCAGGGAAGTGCAGGATGCCACGGAAGGGTTTGGAGACCAGGCAGGCTGCAGTGGCAGGAGTGCAGGGGGGTACGGGGGTGTGTGTATGCAGGAGTCTTGGTAGCTATTGCCCCTGCTGTGTGTCTGAAGGTCAGGGTCATGGGGGTATAGACAGCCTGCAAGGTGAACCTAGCCACTCACAGCTCTGGGTCCTGGGTGGTCTTTGGGCAAACCCTCAGGAGTGAGGTTAAAGATGACCCTTACACACCGTATTTGTTGACATCCACCAAATGGCTAGTGGGCGAGGAGAGCTTCATGGAGTTGGAAATCAACATTTAGCCAGGATGCGTTCGGGGATTCAGCACAGCCCTCGGTCGGCCATTGTTGCTCTCAGTTCTTAGGTACTGACTGGGGGCTGTTAACAATGGCACTTGTCTCCAAGTGTTAGGGAACAGGAAATCAAGGGTTGTCTGCACCTTGCTGGGAGAAGAGGGTGTCTGGCTTCCTAAGCTGTTAGCCACTGGTTTCTTATATGGTCCCTCACCCAACCCAGTGCATCTGCAGCCCCGCCCACCTCCCCCAGCATTAATTTGGTTAGAGGTCAGAAACTCTTAGCATCTAGGGTTGAACATGTATTTTAGGCACTATTCCTCTCCAATCTACTTGAGCCCTCAGCACCCAGGTACAGGTCTCCCTCATCCTCACACTCTCTCTTTCTCTCCTCATGCCCTTCCCTGCCTGCCCCTCTCCAG
Seq C2 exon
GTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009862:ENSRNOT00000013443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123083=Noelin-1=PU(46.5=94.0),PF101864=Atg14=PU(15.4=54.0),PF0154011=Lipoprotein_7=PU(17.7=52.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGAGGCAGAGACGG
R:
TACACCTGCCAGCTCTCCTC
Band lengths:
345-2298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]