HsaINT0118163 @ hg19
Intron Retention
Gene
ENSG00000105088 | OLFM2
Description
olfactomedin 2 [Source:HGNC Symbol;Acc:17189]
Coordinates
chr19:9967483-9968158:-
Coord C1 exon
chr19:9967939-9968158
Coord A exon
chr19:9967590-9967938
Coord C2 exon
chr19:9967483-9967589
Length
349 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGC
5' ss Score
6.57
3' ss Seq
CCCCTGTTCCTGCCTCCCAGGCT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GAGCTGAAGGACAGGATGACGGAACTGTTGCCCCTGAGCTCGGTCCTGGAGCAGTACAAGGCAGACACGCGGACCATTGTACGCTTGCGGGAGGAGGTGAGGAATCTCTCCGGCAGTCTGGCGGCCATTCAGGAGGAGATGGGTGCCTACGGGTATGAGGACCTGCAGCAACGGGTGATGGCCCTGGAGGCCCGGCTCCACGCCTGCGCCCAGAAGCTGG
Seq A exon
GTATGCCTTGGCCCTTGACCCTGACCCCTGATCTCTGACTGCCACACCCAACTCCAGTATCACCTGTTTGTGCCTAGAAGCTGGACACAGTTTTGACCTCTAACTTTTAAACCTCAACCCTTGACCTTCCTACCTAAGGCTACACTTGAGTCCAGAAGCTGGAAATGGCCCTGACCCTTGGCCTCTAACCCCTCACTCACAACTGAACAACATATTGGGACCAGATTTTTGAGTCTTCCCTCATCCCTGGTCCCAGCTTTCCCAACTTGATCACAGCACTTCATCTTTGCCTGGCCTCTCTTGGGCTGTTCATTTCCCCATCCTCATTCCCCCTGTTCCTGCCTCCCAG
Seq C2 exon
GCTGTGGGAAGCTGACCGGGGTCAGTAACCCCATCACCGTTCGGGCCATGGGGTCCCGCTTCGGCTCCTGGATGACTGACACGATGGCCCCCAGTGCGGATAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105088-OLFM2:NM_058164:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF148171=HAUS5=FE(45.6=100)
A:
NA
C2:
PF148171=HAUS5=PD(6.2=27.8),PF0219111=OLF=PU(12.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGAAGGACAGGATGACG
R:
CTATCCGCACTGGGGGCC
Band lengths:
323-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)