MmuINT0113078 @ mm10
Intron Retention
Gene
ENSMUSG00000032172 | Olfm2
Description
olfactomedin 2 [Source:MGI Symbol;Acc:MGI:3045350]
Coordinates
chr9:20671700-20672354:-
Coord C1 exon
chr9:20672135-20672354
Coord A exon
chr9:20671807-20672134
Coord C2 exon
chr9:20671700-20671806
Length
328 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGC
5' ss Score
6.57
3' ss Seq
TCACTGTTCCTATCTCCCAGGCT
3' ss Score
9.78
Exon sequences
Seq C1 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCTGGCAACCTGGCTGCCATCCAAGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAACAGCGCGTGATGGCCCTGGAAGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
Seq A exon
GTATGCCTTGACCCTGAAGCTTGCCCCAACCCCGAACTCCACACCCATGCCCAATGCTGCCCGTGCGCTCCAAAGCTAGGTACGGTTTGGCATCTAACTGCTAACCCTCCCTCTTTGGTATCCCTAACCCAATGCCACCTCAGGCCCCAAAACTGGAAGTAGCTTTGGCTCATTTTCAACCCTTTATGTCCAAGTTGACATCCTGAGATGACACTCAGGTTTCCTCCCTGACCTCAGCCCCCAGCCCTTCCCAGTGCACCCAGTGTCCTGCCTCCTCTCGGAGGTCTTGCTGCAGTCTATCCTCACGCTCACTGTTCCTATCTCCCAG
Seq C2 exon
GCTGCGGGAAGCTGACAGGCGTCAGTAACCCTATTACCATCCGGGCCATGGGGTCCCGCTTCGGTTCCTGGATGACTGACACAATGGCCCCCAGTGCAGACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032172:ENSMUST00000034692:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0)
A:
NA
C2:
PF0219111=OLF=PU(12.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGACAGGATGACAGAGC
R:
GTCTGCACTGGGGGCCATT
Band lengths:
318-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types