GgaINT0126457 @ galGal4
Intron Retention
Gene
ENSGALG00000002515 | OLFM1
Description
Noelin [Source:UniProtKB/Swiss-Prot;Acc:Q9IAK4]
Coordinates
chr17:7618865-7623883:+
Coord C1 exon
chr17:7618865-7619084
Coord A exon
chr17:7619085-7623776
Coord C2 exon
chr17:7623777-7623883
Length
4692 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
3' ss Seq
AGCCTTGCACTCTCTTTCAGCTT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG
Seq A exon
GTAGGCTCAGCCCAACATGGTGGCACTGGCTAAACACCATCGATGTCCCAACACACCTCCCGGCTGCAGGCAGAGATGCGGTTTGGCCATCTCCCAGCGCCTCACCTTGCTGCAAGGGGAGCCCCGCAGCCGGGCGCCATCCTGCAAGCACCTGTGCTGTGAGCAACACTCACCCTGCCAGCTGTCCCGCTGGGGATTGCTTGCATGCCTGATGTTGCTCACGGTGCATGTGCTTCAGGATCAGGCCCGTAAGTAGGCATGTGACTTTTTGCAGCGTTTGCATAAGCGGACGGCGACGTGCGCGAACGCGAGTAGCGCTTATGCAAAGCAAACACATGCGCCCATTCTGCTTATGCATCAATGTCTAAGCTGTTTGCTACCTGGACCTAGCACATCAGCAAACGTCCCTGCACCCCGCTTTAAGCAGTGCGTGTGCAGGCTGCGAAATCAGTTTCCTTTGTTCCTTTTGCATCTTGCAAACCCCTCGTTGAGAAGAGCATGACGTGCTGGCGCGGCTGGGACGCTGGGCAGGATGGGGGCACCCAGCACCGGGCAGAGGGGCAGGAAGGGGGCTGCCTCCCATTGCACATCTCCCCGCTGCTTGCTGCCCTCTCGCTGCCTTGATTTAATTTCTCCTTCCATTATTGACTTTCTCGTTAAGCAATTTAGGTAATCTAAACACATTAACTGCTCTGCAGTCTATTTTGGTAGCACATATGAAATTACACTCTCAGGTAACTTCAAGGAAGAGCTGATCTCTTCTCAGCACTGTATACCCTTGGCAAGGTAACGTTTCATTTCACGTGTCTCCACTGTTGGAATTGCTTTTGCTTGTTTCTAGGCGCCCCTACAGATCCGCAGGCAGCCACCTCCCTGCCTTCCCATCCTGTTACCTTCTGCTCCCCTTCCGAGCTTTCCCTATCATAATTTTGGAGAGGCCCCTGGTCACAGAGGTGGCTTTATGGGAGGAGATGGTCCCCTGTGAGCACCCACACCTTCAGCCCGTCCCTTGGGTAGCAGGAGAAGCTGCTGGTGGTGGGGAGAGGGGATGGCAGCAGTACCAGGGATCTACACCTGGGCCGTGGGATTGCATACCTCAGTACAGGCCTTTCAACAAAACCATCCTGTACCTCAGGGCTTCAAAAGCATTAAGTTTGCCCATGCAGTTTTCACCCCTTCAGCTTAGGGCTCATTGCATCCCCCCACGCCCATGTCCTCCCAATGAGACATCCGTCCAAGCCAGCGGCCCAGGTAAGGCTGAGGCAGCTGGGATGGAGAGGTCTTGCAGGCAACCTTTTCTAGCAAGTTTTGTTGTCTTTTGAAATTATTCCTATTATTTAGATTTTATTTGGGAGTTTTGGCTTTGCTCCTTCTTTCTCCTCCAGCTGTGGAGTAGTTCAGGGCAGCTTTTGTGCCCTGCGGATCTGCAGCACCCCTTGTGCTCACAGAGACCAACTCTGACTCTTGCAAAAGGGTTCTCCCGGGAGGCTCTGCTGCTCACCAGGAGGGTGATTTATTCAGGCGTTTAGCAGCAAGCAGCACAGACTAAATGCCCAATGTTGTTTATCACTCCAGAGTACAAACCAGTGCAAATAGGAGTTAATTGAGTTAAATTCAGGTAACGACCTTACAGCCACTTTGCTGGCACATGGTAAGACCCTGTTTGCTGAGGATTGTTGCTTGCTGCAAATTATCCGCTCAGAGGGATGCACTGAAGTCTCACATAGCACATTTCAGCTTCATTTGCTCCTGCATGGGGCAGCAAGGCTGCTCACCTGCGTTCACCTGCTAGAGCAGGGCTGGGGACCGGGAGGTGGAGGGCATGTCCTGCATTCCTGCCCACCTCACCTCTCCAGGGAGTGTTGATGCTCAGCAGTGCAGCAGCGTTCTCTTTAGACGTGGTCCTTTTTGTATTTGGGGTTTCTTAAGCGTTCTTGATGGATCAATAGTGAAAACACTTCCTGACCCTGTCGTGTGTGTGCGAAGGGAAAAAAGAAATCAATAACGGCACGTTCAATCTGTTATGCTGTTTACATTCTTAAAGATCACTATTTATATAAGGATTTTAACATTTCCATTACCCTGAGAGGAGCCCTGGGAGAGGGAAGGGGCTGTCACTCCTTGAATCAAGGGGGATTTCATTCGGCTGAGCTCTGTAGGCTCATGTTTGCCAATGGCATGAGCTTTCCCAAACTCCTGCAAAAAAAAACCCAGCCCACTGTCCTGGTGGATGGAGAAAGAGCAAATGTGTTTTCCCCTTTGGGAAAGGCCAGGTCCTGCTAGCCTGTGCCCAAAGTGTTTGGGATGGGCTGGGTGATGGAGGTGAGGGTAAGACGTGACCCCACATCCCCAGTGCTGGGAGCAGGTGGGGAGGACAGGTGGGTGCTGCTGGAGCAGAGCCTGGCAGCACAGCACAGGTGATTGCGTTGGTGGTAAATTGCTGCTAAGCTGCTAAACATTACTTGCTGGTGGGCTGGATCTCAGGGAAAATATGGGGTGGGGGTGTTAGCACCCTGGGAGGGTGGTGGTGGTCATCGTAGCTCACTCAAAGCGTGTTGTCTGCTGCTGGTGGTGTGGACAGGGGAAGGGGTTGTGTGTGCGTTGTGTTGTGTTGCGTTGCATTGCTGCTCTGTGGAGCTGCAGGAAGGTGGTTTGGAGCTGGGGCAGCCTGCAGGGCCTCAAAAGGGGCTGAGCTGTATTGATTCCCAGGAGCGGGGGCACACAGATCCCAGTGAGCCTCTGTTCCAGGGACCCCAGTAAGGGAAAATGGAGTGAAAGCAGTTCCTCCAGGAGTGCCCCAATACTGCTGTCCAGTTTCCCATCAGGTCATGGACTCGAGTAATGGGCAGCAGAGCGTGCTTCCCTGGTGCGCATTCATCCCTGAGAGACTCCCTGGTCACATTTCAGCACTGAAAGTGGTCCCAGAAGGAAAATAAGCTGTGAATACAGTCTTTGCCTTCCTTCTCTTTAGTGAAATATTGGACTCAGTCTGAGAGTCAGGAGATACAAGAATCCAAGCTTGGGAGCTGCTGCCGTGGTCTGAACTGCAGCACAGCCAAAGGAAGCAGCAGCAGCAGACCAAGTCCTCTCTGCCCTCAGTGATGTTCCTTCTGCTAGTGGTTGCTTGCCCCATAGAAAGAGGGAAAAAAGCTGATGGTGTTAGGAATGTGGTGCACACCTCAGCGGGAGCAGACAGGAATGAGTGTCACAGAGGCTGTAGCTGTGCATCCCCAGGGGTAACCCCACAAGAGCTGCAGGGACCTGGATCCTGGGGGCCAGGATCTGCTCTGTGATTGGTTCTGTGAGCCATTTTGGACATCTTCCCTTTTATTTGATGCCTCTGGTGGGTTTGTGCTGAGTAAGTGCCTTGTCCTGTGTGAGAGCAGCCCTCTTGCACTGCTGGAGAGCTGCTGTGGATGTGCCGAACGTGTATGAGGTGGTGCAAACAGCACTAGTTTACCCTTATCAGCTGATACTGCTTTTTTTCCCCTTTTACTTTTTTATTTTTTAATCAATGCGCTTTTATACAACCTTTCTCTCCGGGGAAATGGAAGGAAAGAGATAAAGTGACAGCAGTGTGGGGCGGTGATAATGGAAGGCAGCAAGGAGCAGATCTGTGATTAGGGCTCCTCTGCAAGGGGAATTCACCAGACATTAAGCATTCATTATTTTAACCCTTTGCGTCCCTTTGCCAATGGCTCCTCCTGAGCCGAGTTGTTCTGCGTGCACCAGGTAGGATGAGACCCCAGGGGAGACACCAGGAAACCTATGCTGAACTTTGGGTGCTGCCAAACGTTGGGTGCCGACCTTTGTTTGTCTCTCGCAGGAGGTGCTGCTGCAGGAATGCTCTGTGCAGGATGTGTCTGGGTTTTCAATGAGTGCTCCCGTAGCAACAGAGCGTTCCACGCTGACCACAGCCCATCCTGCTGCATCCCACTGTGTGCCTCCGCCTGTCATTCTGGAGTGCACATATGTTAAAATGATGGCGTTTGGGGAGACAGGAATGGCAGCTTTGGTGGAACTTGGGGATAGCAATGTAAAAAATAAAGTAAATATAAGGAATAAAGGAAATCAGCATCTGGCTCCTGGAGGGGGCAGTGGTGCAGGAGGGGCGCTCCTCAGCAGCCCCTGAGCATGCAGGCACGTCAGAGCAGGGCAGGAGGCTGTTAGAATCCCTAGATGGTTTTTGCAAGGAAAAGAGATTTATATCACCTATAATTTCCCACTTCTTTTTTTTTTTCTCCTTTCTCCTTTGCATAACCTGTAACAAATGTGTTGCTTCCAGCAGGGCTGGAATAGACACGGCTGTCTTTTTATCTTGGCTGCACCCACTCTATTATAGCAGAAATGAGCAGAGCCGTTCAGCTAATTTCTCCACCTGGCTGCTCGACCCTGGCTAACTCTTCTCATTTTCTATTCTGCAGCATGAGCATGCAGCTGCTGCGGGAAGGCTTGTTTTCTTGGGGCAGCGCGATAAGGACAATTGTTGTTAAGAGATGTGGAACAACCATAAACCACCCGGCAGTTGTTCTCAACCTAATTGCCTTTAATTAAATAACAACACGGCTTCTTGGAGTGCTGGGATGGGGGGCAGTGGGGTCTGGCAGGGAAAGACCCAGCGTTAGAAAGCGTGTGCCCGAGCAGCGTGGCGTTGTTGGGAATGGTGCTCACCAGCCTTGCACTCTCTTTCAG
Seq C2 exon
CTTGTGGCAAGCTGACGGGAATAAGTGACCCAATCACAATTAAAACCTCGGGGTCCCGCTTCGGCTCGTGGATGACGGACCCTCTCGCCCCAGAGGGAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002515:ENSGALT00000003964:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.1=100),PF101864=Atg14=FE(42.0=100),PF045827=Reo_sigmaC=FE(45.9=100),PF131661=AAA_13=FE(47.1=100),PF045137=Baculo_PEP_C=FE(55.7=100),PF138741=Nup54=FE(58.9=100),PF045087=Pox_A_type_inc=WD(100=28.4)
A:
NA
C2:
PF0154011=Lipoprotein_7=PD(0.1=0.0),PF101864=Atg14=PD(11.5=55.6),PF045827=Reo_sigmaC=PD(5.7=25.0),PF131661=AAA_13=PD(8.4=36.1),PF045137=Baculo_PEP_C=PD(3.8=13.9),PF138741=Nup54=PD(0.1=0.0),PF0219111=OLF=PU(64.0=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]