RnoINT0105263 @ rn6
Intron Retention
Gene
ENSRNOG00000009862 | Olfm1
Description
olfactomedin 1 [Source:RGD Symbol;Acc:620320]
Coordinates
chr3:6782865-6790717:+
Coord C1 exon
chr3:6782865-6783084
Coord A exon
chr3:6783085-6790610
Coord C2 exon
chr3:6790611-6790717
Length
7526 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
3' ss Seq
CTATGTGCGCTCTGTTCCAGCCT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG
Seq A exon
GTAGGCCCAGCGCCCTGCCGGTGTGGCACTGTCCAACTCTGCCACACACGCGGGTGTAGGGAGTGATGCTGAAGCCACGGTGCCTGCCTGGCCTCAGCAGGTGATGGCTGCATCAGGGCTTCTGGGTAGGGCCACCCAGAGAGAGCAGCAAGAAGTGCAGGCAACACCCACCCCAGGGCATCACCCATGTCCAAGCCCCATGTCAGGGCCAGTTCTAGACCCCACTGAATCTAACATTTGGGGAAAAATATGATGTTAGATGCCACATGCTATTGGGTGGGTGCACATGTGTGCACAGGTGTGAGTGCTTAACATGCATGTGTGTGGTCCGTGCATGTGGTTTTAGGCTAAATCTAAAGGGCTGGAAACACATCGCCAACCAGGTTAAGAAGAGAACTGATAAGACACGTTGAGACAATTCGTCAGGCTTAGTTGGAATTAAAAAAGGGGGTACAACTTCAGGTTGTATTGGCAGAGCGAGTGGGGGCCGTCCGTTGGAGGCCTGGGTGGAGTGGACTCATGAGCCAGGCGGTTTGCCTCCCTCTCAGACTCGTGTTCCCTGACAGTCCTGAGGTGGGGGGCGTCTGGGTTCTGATTACCCGGTGGCTTTGGCCATACTGCATGTGTGATTGATTGTCTAGGGTCATTTTTAAATCGTACATACTCCATCCCGATACCAGCGTCAGCACTCCGCCATAGAGCCTGACCAACTCATTTGTTTTCTAGCATGTACTTATTATGGTGACTTTGCCTCCAGAAAGATTTTTGGGGACTCTGTGTGATGCTCTGACTCAGTCCCTCCTTCGTCCACCCCTTACAAATTTAAAACACCCCAAGGAACAAACAGCCTTTCAAAAGCCTTGGTGTGGACCAAGTAAGTGGTTCTGTTGCAGAGCAAACACAAGGACCTGGGTTCAGTACCCAGAACTCATGTAAAAAGAACCCTAGAGCTAGGAAGGGGAGACTCAGGGCTTGCTGGCCAGCCAACATGGCTCACTTGGGAAGTAATATGGTGAGAGACCCTGTCTTCTGGCCTCCACAGGAGCTCGTGCACACACGTGTGCACTTGCACAGACCTACACACACACACACACACACACACACACACACACACACACACACACACAGAGATCCTTAGTGTTAGATGACGAATGAGACTAGACAAGTAGTCTCGTGACTTCCTTGTGATTCCCAGTGGCTGCTCCTGATTTGTCCCCAGTGAAGGTGTGTAAAGTTGAGGTCTCACAGGCCTCATGAACTAGGAAACTATGCTGGGCACTGGGGACTAATCGTTTTGAAGACACACTTGCAGGGTCACCAAGGAATCATGTCCCATGTATATCCTTGCTTTTGTGCCTCACGAAACCCATGACCCATTGTGGAGGGGGCTGTAGTGTCAGTCAGCCCGTGTGTGGGTCTGGATGAGAGCCTCCTCCATTGTCGGGCTGAGGAGTAGGCTATGGGTCCCTTCCAGTCTTCCCTTGGCTTTCCACCATGGCTTTTCTTCCCCAACCTTTACAGCCAAGCACTTAGCTATCTTCCTGGTCTCTGAAGAGCCTAGAGACTGGGCTTGCTATTTATTCCCTCAAAATGCTGTTCCCCGTCCCAGGTGACCAGGCTGGGTGTCATGCCTAAAAGGAACCAAGAGAATCCATATGGAGACCATGGTGGGACATTACCAAGGCCATCGAGCTAGTGGGCCTTTGGGAGAGGGGGGCAGCGCACACGACTCTCCAGGTTATCTCAGGCTATCCAGACTTCCCATCTGTCTACAGCCTAATTTTAGCAGTCTCGTGAATTTACCTTATGTCTAGGATCTTGGGGCTTTCACATGGCTGCCCTTGGGCTGTGAAGGCACGTCATTTGGGAACAAAGAGAGAATGATAAAGCCAGTTAATCCCACCCTGGGGTGCACCATCGAGGTCACCTGAGGGGCTTCAGTAATCCTGTACTTGAAGAGAAAGGGCAGCTGGGGGTTGGAGAGTGAGCTGTGAGCCCCCAGTCTGGGCAGCCCTGGGGTGCTAAAAGTAGCAAGAGCCACTCCATAGTAGGTGCCTTTCCCAGGTCCTTCCCACCATCTTCCATTGCAACACAAAGGCACAGAGAATCTTTGGGCCCGAGGGTCACTATTGTTGATAGTGTTTGTGTCACCAGCTCTGCACTGCCTGGCTCAGAGGAGCTGGGAGTGTGGTAGATCAGTAAGCGGGTGGGTGTGGGTGTGGGTGGGGGTAGGGAGGGTGGGGAGAGGAAATAACCGGAAGGATAAAGGGACAGAGGGAGGCTGAGCTAATGGTAGATACACAGGCAGGTAGAGGATTGGTCAATGGCTGGGTGATAGATAAGCAGCTGATGGGAACAGGTGGCAGACGGTTGACTGATAGGTCTATAGATGGGATTAGCATCTGTCCCAGGCCTTCATTCAGCCCAGGAACACAAGGACTAATACCCTATGGCTGCTTAATTCAGTCTTTGCTTTAGCCTTGCTGAGAGGCCTCCCTAGCAGCCTGCTAAGGGGATGGCAATCCCCAGGATGCGGCCTCTGGCTGTGGGCAGCACTCACTGCTGGCCCAGTGGGTGGAACTCTACACGTGCGGAAGCTCCATAGTTGAGTGTTAGTCCTTAAGTCCTCAAGCCCCAGTCTCCTTGGTGTGTCTGCCTTAGCAGATGCTTGGTTACATTTACCCGGAGTGAGGGAGGTAAAAGCTCCCGAGTCTCTCAAAGTCTCTCATCGGAGCTGCCCTGGTTGGCTCTTTCCTTCAGATCAGATGGCAAAAATTCCTTCACACATGCAGAAATCACAAGGCAAGGTCCAGAGTAACAGTTGCTCCTGGTTCCTTGATGGGGTGGCCTGCTTTTCTAAGTGGCCTGGAATTTGAAACATCTTCCTTCTGGACTGAGCTTAGGCATAACAGGTCTTGGGTCTTTTCTGGGAAGTGCAATCCCCTGGAGTGGGAGAGAGGCAGCACTATCCAGAACCCTGGTTGCTGCTGAGAGGATGCTACCCCGTCAGATCCGGACAGTTAGCCTGGGTAAGGCCAGAACTTGGGCCTCAGCACACCAGACTTAGGCCACACTGGTGCTGCAGGCTTCCTTGGTCACTGTTACCATGGAGGACTGGCTGGCTTAAATGACCTCCCTGTCATACCATCCTGGCACTGATGCCAAGGGCTCTCTGGTGGGGTTTTTTTCTTTCTGAAGATGGGTTGGAAGACCCCCGAGAGCTAAGGCCAACCCAAGGGGAAAGAGTGGATTTTACTCTATGCAAAATAAGTCTTAGTAAAGCTGTGGCTTCCACTTACAAGTTGCCTGCCAGACAGGTGAACCATCCACGCCAGTAGGATTCTAATTGCAGGTTTCTGATCTGGTCAGGTACACATGGCCGTGCCATGCTACTCTGTGAGCTCCTATATGCTCTTCAAGGAAGACCAAAAGACGCCTTCCTAACACTTGAGATGCCAGAGTCAACAGGCGGAGGCTGGCCTCCACTAGCAGGGGCAGTGGGCATAGTGACCCCCAGAGCTCTGTGATGACTCCCAGATAGAAGAGTTAAGGGTGATTTGACAGTGGAAGCCCAAGGGACAAGAACCCAGGAGTCCTGCAGCCAAAGCACCTATTGGACCAGGCCTGCCTCCTCCATTTCTTCTAAAAGGTGTGGTCCACTAGAGACCTGGCTTTCCTGGCTAGGGCAAGAGGGGCGGGGTGACTCTAAGATAGTGCTCACAGGTCTGTTGTAGGCTGTGGATCCATACCTGGGCCTGGGTTGAAGCTGTTTCTCCTATGTCTTGGCCTTTGTTCCCAGCCTGCAGACTTCTTTCTACATGGCTCTTCTCTAGTTTCAGGGCTAAATACTGAGAATGAAGGCCAAAGCCTGTCTGAGGACACAGACCTTCTCACCCACCCTCCCAGATATGCCTATCTTGACGCAAGCATTGAGATGGTTCAGGCTGCTCTCAGCCTGGCATCTTCCCAGGAAGTGCACAAGGCTTGTCTAGCTTCCAGCTTGGCCAGTAGGCATCTCCAACCCAAGACCCAGCTGGGCACCATCCTTCCAGAGGCCTCTTCTACTGTCCCTGCCCCCGTCCATCCTGAGTATGTGACTGAAGAGGGGCACTTTCTAGAACTGAGTATGCCAAGATACTGCCAAGCCTCTGCCGTGGACTTCTTTAGATTCTGTCTGTTCAAGAGGTCTTGGCAGAACTAGTGTGGACAAGGAACCAAAAATAACTCCCTGACTCAAGGAGGGCAGGCAGCCTCCAGCCCCATGGGCCCTGGAAACTGTGCCTGCCCTAGCAGCCTAAAGAGCAGGAAATGTACTAGCCAAACCTACCTACCCTCCTCAGCATTGGGGCTTTGGAAGGCTGACTGCGTGGTGACCGTGCAGATAGAGGGTGGCTGGGCGTGGCCGGCAGGCTGGTCCTGCTGGTCATCCTTCCTGTAGAACTCGGGAATGGATCTCTGTTACTTGTGAGATAGTGAAAGGAAAAGGTTCAGATGGGTGGAGGGTGGTAGGATTGTTCAAGGCTGCCCCTGACCTGGCTGAGAGCAGAGTCTTATTTTCTGCCCATTTCCATCTGAATCCAAGGTCGAATGACTGAACAACAGACCCATTCCGAAAGGCCTGTGTTGTGCACCTACGCTAATGTGCTTTCCTGGGGTCACTGGTGACACTGTACCTGCTTGCTGGTAACCGAGATCAACATGGGTACCATGAAGGGCGAGCTTCACTCCAAGAGGCTCACCCTCCTGAGCCCAGCACTTATCAGACGGTGAACTGATGTACTCAGGAGGCTCCTCTGAGAACTAAGTCATTCGTTGGTTTATGGGGAAGTAGGGTGAGTGGAAGAGACTTCCTACCTGGAGCAGCAAGCCCCAGGGGCTTTGGTCGGCAACCCCGGGAAATGTGGGGTGTAGCGAAGGCCACGGAGAAGGATGAGATAAGGACGTCTTTAGGGCTAAGCATGTGTCTGGGCCCAGCCCTAGAAGCTGGATGGGAAGGCGAACTGCTGCTCCAGAGTGGGGATCGAACAAGCCCGACCATGGAGGTAGGGAAGGCTAGGACCCGGGCTTGGTAGGCATCCAAGCTGAGGTGGGCATCCTCCTGACACTTCTGCCATGTCCAGGTGATGCACAGGAAGACAACAGGTTTCCTCAGAGGACTGTTCAACCAGGAAGGCACCTCCAGTGGGTTTGGGACAGAGCTAGTGTGAGTTGGCAATCTCATAAAATCTACTGTGTGGCTAAGTCATATGTTGGCTACAAGCACAACCTGCCATTGGGTTTAAAGCTGCCTCCCACAGGGATCCCCAGCCATGACAACTGTGTGTGCTGATTCCTTTGAACTTAACCTCCAGGCAGCTCATAGACCGTGTCTCCAGGATGGGCAGGAGACCTTCTATGAGAAATTGCAGGGATCAGTGCTCCGCAGATGATGGGTCTGGATGGCAGAATGGGGTCCGGGAAGAAGACCTGTGGAGAGGTTGCCTTCTGTTAGCTTCTTTCAGTTCCCACCCATGTTAGAGGGAGCCTCTGTCTCCTGGCAACCCAAGACCCACCCCTTAGGTCAACAGGAACAAAGGAAGAAAGACTGGGAGTGAGAGGTAGAGTCCAGCCTGGCCACATGGCTTCTCCTGCCCAGCCTCTACAGGTAGCACATAATGAACTCGCTGGGATTTCAGAAGGCAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGAAGTTGGTTATGGCACTCATTAAAATTTTTCCACAGACCCATCAGGATCCTCACTTCCAGCTGCTGTCAGCACTGATCAACCTTAGCCTCTCCCTGTGCCCTTCTTTTTCCTTTCCCTTCCCTTGGTATCTCTTCCAAGCCCGGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGTATGAACAGAGGCCAAGTGGGCATGCTCTGCGCTCAGAGATAGACCTTTTAGATGCTTGCACTCAAGACCTCCATGAAGCCCTGAGCCTCAGTAGAAAGTGTAGGAAAACCCAAGCTCCTCCTACAAGGGGAGTTGACTTTGAGGAAGGCACAGCAGAGTGGGTACAGTGTGGCACTTCCTCTCCCAGTCTGGGCAGGGGTACCTGGGCTGGGGCATTAAAGGGAATCCAGGCCTCGAGTCTTCTGTATAAGGTGGGTTTTAATCCTGTTGAGCCTCCTGCTGTACAGGGTTGCCTCTCTGCTGGCTCTTGGGCCAAGCCAAGCTGTTGTTCTTTCCAGTCTTGTGCGATGCCACTGTGAAGATGCCCACCCTATTGCAGGCTTGAGGAGGTGGTACTGAGTGTGGGAGCAGGCGAATTGCACCCTCCCTGGGGCCTGCCCTGCCCTGTTCACTGTAGGATTATCTCCACTTCCCTGTGGTCTCAGGTTAAGCCTCTCACAATCCTGCCTAAGCAACTGGATCTTCTCTGAACTTTACAGACTGTGTGTATGTATGCTAATATAGTCCTCGAGGGGTATCCTATAGACTGGGAGCTGGGGGTCACACTCAAGCCTGACCTGGTGGAATGAGAAGGAGGTGTCCTCCACATCAGTCTCAAGCTGGGGGTCCAAAGGGTGGCAAGAGAGTTACAGGCTAAGGCAGGAATGCTGGGTCATAGCCTTAGCACCTCCTGAACGGCCAGGTTGTAGCTCTGAGTTCATCTCTGGCCAGCTCTAGACAGGAGGCATGCAGAAGTCGATTTCAAGATCCCATAGAGCATGACACTCAAATCCTAGCCCTCTTGAGACCATGGAAAGCTCTCCCCTCCCTCTCACAAACACACACACACACACACACACACACACACACACACAGGCACACACAGGCACACACAGGCACACACAGGCACACACATGCACGCACGCACGCAGCAGGACGCCAACAAGCCTCTGCCCATCTTCAGCAGGGAGCTGGTTCCAAGACAGACACATGCACAGGGAAGAAGCTCCCATAGTGTAGGGTGCTGTTGTGGGTCTCTAGAATTGTCTATCTGTTTAGGGAGGTGAATCCTGCCTGTGTCCAGGATTCTAAGTTCCCACGATGCTGGTTAAGTGCTCTATTCCAGCAGCCAGAGACTACTGAGCTCTTTTGCTCCATTTCCTAGAGGAGACTGAGGCTTGCTGTGGCCAGCCCTCACTGGTTATTGGGCTGCCCCGGCCTTTTGCTTACAAGGAGTCATGAGGTCCCGGAGTGCAACCATGCCCTGCCGTTGCTGCCCTCGGTTACTCTCTCTAGAGGAGGAGGTGGTTCTTCTTGGGCCACCGGTGGGACCTGTGTCAGTAACATCATGAGCTGCTGGGCTCCAGATCTGGAGGGGAAGAGGAAGAAGCACCATCCTCCGAGCCTAGCTGTGCCAATGGGGGAGGGGGCCAAGGCTCTCCGCCGCCTATTGGCCCTCACCTATGTGCGCTCTGTTCCAG
Seq C2 exon
CCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCAAGGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009862:ENSRNOT00000013443:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.6=90.5),PF138741=Nup54=PD(56.8=90.5),PF045087=Pox_A_type_inc=WD(100=28.4)
A:
NA
C2:
PF101864=Atg14=PD(12.0=58.3),PF0219111=OLF=PU(12.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]