HsaINT0118158 @ hg19

Intron Retention

Gene

ENSG00000130558 | OLFM1

Description

olfactomedin 1 [Source:HGNC Symbol;Acc:17187]

Coordinates

chr9:137990132-137998701:+

Coord C1 exon

chr9:137990132-137990351

Coord A exon

chr9:137990352-137998594

Coord C2 exon

chr9:137998595-137998701

Length

8243 bp

Sequences

Splice sites

5' ss Seq

TAGGTAGGC

5' ss Score

7.72

3' ss Seq

ACCTGCGTGCTCTTTTCCAGCTT

3' ss Score

9.52

Exon sequences

Seq C1 exon

GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

Seq A exon

GTAGGCCCAGTACCCTGCGGGACGTGGCGCTGCACTGCCCACCTCCGGCACACGCACAGGCTTAGGGAGTGGTGCTGAAGTGGACAGCGCCCGCCTGGCTTCGCGAGGTGATGGCTGGATTAGGGCTCCTGGGCAGGTCTACCTTGAGAGACAGCAAAGGAGGAGCGTAGGCCACACCCATCCTAGGGCATTGTTCAGAGCCGGGTCTTGTGCAGAGGCCACAGACCCCGCTGAGTCGCACATCTGGAAAAAAATAGCATACCATCTGGCAGATTGTGTGTGTGTGTGTGAATCGTATGTGTGTGTGCATTGAAGACACCAGTTTAATAGGGCTGGCAATAACATCTCAGATTCCTCCGGATTGAGAACGGGGGCTGGTGGAGCTCCTGAAATATTGAATCATGCATAGTTTGAATAAAAAAGGGAACAAAATTCAATCACATCTCAGTAGAGCTGCCATTCACAGCACGGGAGGGAGCCCCTGCTCACAGCCTGGAAGGGGAGGAGCCTCTGAGCAAATGAACCCCTTCCTCGGGTGTGTTTCCTAAGAAAGACCCCCAGTGTGGGGTGACCCATTTGGATTCTTATTTCTGATTGATTACCCATTCACCTTATCAACTTTCCAGTTAATTACTAGGAGAAATATTAACACATTAGTGTCTGAGTCTGCTTTTAAATAGCACATTTCAAATCCCAATTCCACTTTTAATTTTTCTTAAGAAATATTAGCCATCCGTCCTCACCAAGCTGTTTTTGTTTTTTGTTTTTTGTTTAATAACACAAAGGTTGTTGTTTTCATACTACCTACTTTTTAGGGTAACTTAGGGTAATTTTAGGGTGATTTTGCCTTATGAAGTTTATCTCAGGCTTTCTCTGATGTTCTAACTGGATTACCTTTTTATTTCTACTCTCCCTTCCACACACACACACTCCAAGTGCCTTACTATAAACCTAAAACATCCAAAAAGAACACTTTAAAAAAAAACCTCTAATGTTAGTCAGGTGAAGAGAGAGAATATTCAAGGGGAAAGAAAAGAGTCAGCCAAACCCTTGGTTTCCCAGGTTCCCAATTTAGGTGATTTTTAAACGCTCTTCTAGGTGTCCTCAGTGAACGCACAAAGCTTTAAATTCCCCAGTCCCGAAACAGAGACAATAAGAAATGCTTGGAGTCAGAGAACTAATCCATTTTGATGTGTGCATGCTGGCTGTGTCTCACGGGGGCTGCTAACTGCATTCTTTCAGCTCTGTGCTCCATGGTGCCCAGCCCTGGTATGACAGTGGCTGGGTGATCTCAGACAGTCCCAGGAGGGGGGTCTGGGCCAGATGGCCTCTACCATGGCTTCCCAATTTGACTTTCTAGGAGTTGGTGTGAGTGTTTGACTTTCTAGGAGTTGGTGTGAATGTTAATGATGATAGGGCTGTATTAACGATCATGGGGCTATATAACTATTGCCCTTGGGTACTGTCTTCGGCTTGCTACCCATCGTGACCTTGAGTGACCTCACCATTGCCCCTCTCTCCAGGACCTCCAAACACTCCCACTTATGGGGTCTCCCTCGGCCTCCGAAGAATCCAGTGGTGGGGTCTTTTTGTTGTTGTTATGTATTTCCCCATGAGCAGTGTCTTCCCTCCCTGGAATAGACAGGGCACATCATGGAGAAACCCAGAGAAAACCTCCACATTTTCCAATCAAGGAATCAAGGGAGCAAAGTGAGGATTTGGAGTAAAAAGTTGCAAATAGTGAGAAGCCAAGGGCCTTTCTGAGGGGGCACCACCCCTCCCGGATGAGCTGGCCTTCCCATCTGTGCTTGGCCTATTTTTAGTAGCTGGGTGAGTTTACCTTGCAGCTTAAAATCTTGGGTCTTGTGAAAGAGATCACATGGCCGTCCTTGGGCTGCTAACACCATTGATTTGGGAGTAAAGAGAGAGGGTTAACAGGCCTCCAGAGGCCCTCTTTCTCCCACCTTTGGAGTGCAGCTGCCTGGTTTCACCTCTGCGTTTAATTCTTTCTTTGGAAGGGCTGCGACACGTAGGCGGAGCTGCTGAATCAGAGCGTCTGCAGGTGGGGCCCTGGCATCTGCCCGTAGCCAGCACCCAGCTAATCTTGACACACAGCAAACTGAGCTCCCCCGTTAGAGGAGGCAGTTTTGTAAGGTAGTAAATGCCACTCGATAGCTGTGCGACTCCCCCAAGGCATTTCCCCTCTCGAGTTTCAGCTGCCTCCTCCTCTGTAAAATGGTGCAGGGAGTCCCTGAGCTCTGGGGTAATTCATGGAATGGTAATTCATGGAAGTCCTTCAGATCCTGAGCTCAGCACTGTGCCCAGCAGAGGAGGTGCTGGTAGGCAGGTAGGTCGATGGATAGAGAGGTGATGACAGCTGACTGATAACTGGATAGGTAGTTAGATAGATAAATGATTGATTGATTGATTGATTGATTGATAGATGATTGACACATAGATAGAGTTAGCAGCTGCTGACCTTCCTCCTCCCTCTTCCCAGGCTTTCATTCAAGCTCAGTAACTTAAGCACCAAATTAATATCCTGCAGCTGCTTAATTTAGCTTCATTTTAGCCTTGCAAATAGGTACCCATCTCAGGACCACCCTGGCAGCCTGTTCCCTTGCTGGGAGGTTGCTGAGGAGCCCGGCCTTCTGCAAGGTGGAGCCGGCACCCGCTGCCGGCCGTCCTGGGTGGTGAGGGCTTCTGTGAGACGTGGCCTCCAGTAGTGGGCAGTTTCCTCCCCTGTCCCGGACCCCGCAGTTTCTTGGTGTGCCTGCTGTTCCTGCTGGTGTGAAGTGTGACTGCAGGTTCCATGGTCTAGTGAACAGGGTCCGGGTTCCCTTCCTGCAGTAAGCCTGGAGGAGAGGCTCTCCCAAAGTCTTCCTGATAGTTCTCTCCTTGCTGCTACCTTCTTCAAGTCACTGTTGCTGACAAGCCCAGAACATACTCAGAAACAGAGAAAACAAGGACCAGGGCTCCATCAGTTTTCAGTTTCCAATTCTGAAGATCCCTCTTTTGATGGCATTATATGATTTTCCTAATGGCCCAGCCAGAAACTTGAATCTGAACCTCTCCTCTCGGGCATCCTCTGGAAAGGAGGCAGTTTGCCGGTTCCCCTGGAGCAAGTCTTGTTGCCAGGCAAGGGGAGAGTCAGTGCTGCCCCGTGCCCCTGGCCTCGTCCCCTGAGCTGGGCGTGGGGCCCTCTCTCCAGGGGAGCCTGCAGAGTCAGATGCCCCAGCAGCAAAGCTGAGCGAAGCCAGAAGCGTGAGGGTCAGTGCACGATGCTGCTCTACCCATGGAGCTCCCGGGGCGTGGCATGTGCCTGTCAGCTTCAGGCCTCCGTGGTCCTCTCTATAAATGAGGGGTGAGGGGGCCAGCTGATTTGAAGGGCTCCTCCCAGATATACCATCCTGGCACTCTGGTGCTAAAGGCTTCCTTAGTTTCTTTTTTTTCCCAAAGCCTGGGAAGCCCCCAGACACCCATAAGCACAGACAGAGCCTGGGCTTCAGGGTCAGTCGGGTCTTTTTGTTTCACTGGAACGCGTCTTAACAAAGCCCGCTGGCTCCAGCTTCAGAGTCCCCTGTCAGCCGCTGGGAGCTGGGCCTGCCTGGGTATCTAGGTTGATGCAAGTCCAGTTGCAGGCCCCCGTCCCAGCTCGGGATGGCAGGGCATAGTGCTTGGCTCTGGCACCATGCCCTACACTCTGTCCTGGGGGAGACAAACCTGAAGCCTCCCTCTTGTTCCCTGACCCTGAGATGTGAGAAAGGGTCAGCCAGGCAGAGAGAGGGTCTGTCTTCTCCTGCCCCCGGCCCTGAGTGGAGCTAGACAGTGAGCCACTGTCACCAGCACACATGGTGCGTTCAAGGATAGAGAGTTAAGCCCTTGCCAGTGGATTCTGAAGGAAAACCCACTAGAGTGACAGGGGAGGAAATAAACCAAAATCTAAAAAGCCGCTCAGAAGCACTGACTGAGTGGGGCCCGGGCGGCCAGGGCTTCTCCCAGGAAGTTCTCCAGATGACAGGCGGTGAGAGTCTCCTGGAGGCCCGCCCTTCCTGCCATGCGAGGAAGAGGGTCTGCCGTGACCCTTTCCTCAGTGGCCGCCCCAGCCCAGGCCCTGGGTCTGATCTCGAGGCCTGGCGGGGATGCAGCATGGTTCTCAGCTTCTTTCATCTGCATTTTGGACATCGGTTTGTCCAAGTTCCCAGCTTTGCAGACTTCTTCCAGCTTAAGTCTTCCCGGATTGCAGGAGGTAAAAGCTGTGACCAAGGGAGATAGGCTCAGAGGACAGGCAGCAGGACAGGAACCCCATCTGCCTGCTTCAGGGCACTCAGCCCTCCTGGTCTGTCTCCTTTGTTGCCCAGAGACCCCTCTGTCTCTGGCCTGAGGTCCTCAGTGGGCATCTCCCCGGGCCTGTTCTATGAGATCGTCCATGCTGCTGCGTAGAAGTGGCCTCCTCTTGTGAATAGCAAGAGGCAGATTGTCTCATCCGCAGGGGCATCAGCTTGTCCAGGCTCCCGGCCTTGCACAGCGCTCTGCCCTCTGAGCCCGTCTGGGGCCGTCGGGGGGCCTCTGCCCCTCCAGCTGAGCATGCTGGCCCTCCAAGCCCAGGCCTTCCTAGGAGAGAGAGCCCGTTTGGGCCATTTCCTGAGCCTCCAACAGTGCAGGAAGCCCGGCCAGCCCTCTCCTGCCTCTCCCCTCCTCTTCCCTCCTTGTGTGTGCATCCTGAGTGCTCGTGACTGGAGAGGGACGCTTTCCTGAACTGCATGTGCCAAGATTCCACTGAGGCTCTGCCATGGGCTTTTTTGGATCCTGTCAGTTCCTGAGGTCTTGGCAGAAGCAGTCTGGATGGAGAACCAAAAATAACTCCCTGACTCAAGGAGGGCAGGTGGCCTCCAGCCCCAAGGGCCCTGGGAGCTGTGCCTACAGCCAGCAGTTGGAAGATCAGGGTGCAGAGCCAGCCTCACCCTTCCCTGCCCTTGCTAAGCCAGGATTTTAAGGCTCATTTCAAGGGGTCACTTTTGCATTTAAAAGAGGGAGCTGGAGAGGGTGATGCTCAGCTCTGAGCCAGTGGGGCCCATGCAGGAGGGAAGAGGGAGCCCTTGGCCCACGGCAGGGTGGGCCTGGGGCAGAGCCGCCCTCTGGAGAGCAGAACTGCAAGGTCCAGGGTGGGCGGGATGAAGTGGGAGGGGTGAAGACCACGTCCACTTGGGCTCGCCTTTTCTGCACATCCTCAGGCTGAATCCCCAGTGATGCCTCCTGACCTCTGTGGAGCTCTGACTCTGTGGCAGGTGCTGTCCCAAAAGCTCTCTGGTGGTCCCTGCCCTAATTCTCACAGCAGCCTTCCGAGGGGGCACTGTTGTTATTAGCCCATCTATAGAGAAGGAGAGGGAGTACACAGCAGCCCCCAGGGAAGAGGGTCACCCTCCCTCCTTCACTGAGACAGAGAGTGAAGCCTTCGACTTGGGAGGCTTTTCTGAGCAATGAGTCATTCGTTCATTCATTAATTCATTCCATACAAATCCCCAGGCTGAGTTTTGGAGGAAACAGGGTGAGTGCAGGAAGCTTCTTCCCTGGGGCAGTAAGACCCAGACATTCCTTGGCAGCCCCATGAGATGTACGGTGGGAAGCTGGCTCCGGCTGCAGTGAGGACAGGCAGACCAGGCAAAGTGAAGGAAGGGCACGTCTTTAGGGCAGAGGTGTCAGTTTGGGGCAAGCCAGTGAAGGTGGGTGGGAAGGTGGGGCTGGGGCCGGCACACCAGGTGGAGGGACAGCTGGAGCAAAGCTGCGTGAACCAGCAGGGCGGGGCTCTGGCCAGGCGGCGGAGAGGAGCCCAGCACTGACTTGCTGCCTCTGGCCTCTGCCGGCTGCCTGCAAGGTGGAGGGCAGACACCTGGTCTCCTTCCGGTAGGTCATGCGACCGGGATGAGTCTGCTGCGGGTGTGGTTCCGGGCGTTAGTGTGGGCCAGCGTCACGGAAGGCCCGGCGTGTTGACTGAGGAGGCTGAAGTGGCCAGAGCCCGTGTGCGCTGCTGGATGGAAACCCAGCATGGGGCCGCCACTCCTCTAGGCTTCTCCTTCCGGACAACTAACAGAACCACGGCGTGGAAAGTCCTCACGGGATGTTCACAGGGCCAAGGCACTGTCTTAGGGGACACCAGCCTCTGGATGGCAGGGAGGGCTGGAGAGGGGCTGTGAAGGGCTTCTCCCAGCGCCCACCCAGTGCAGAGGGAGCTGCTGTCTCCCCCGAAGCCCAGGGCCCCCCAGCAGCCGGAGGGTGAGCCCAGCCATGGCTCCTCCCTCCCACCTCCTGCCTCCTGCTCCTCCAGGGCCTTAGTGAAGCCGCCCTGAGCTCCACCTCTCCGCCAGCGAGTTGCACTGGGGTGAAAATCTGGGCCGGGCTCTCCTGGAAGAGGAGTCTCTTGTGAGACTTCTCAGACCCCCCACATCTTCTTACTTCTCGTCCCCATAGACGCCGGTCAGCTGTGGCCATCTCCTCTCCATCCCTTTCTTCTGCTGCTTCTCCTCCCACAGATGGGGAGCATGGCCTGGCCCAGAGCCCGTGTGGACCACGGCCGAGAAGACCCTGGCAGCCTCTCACCCGGCCCCACTGCCAGGAAGCCTCCAGCCATGAGGGGACAATATTTACTTGGGAAAGCACATAATTCCTCCTGAAAGTAGGAATGGGGAACTACGCACGGAGGAGGAAGGGAGGGAAGGGCTGTGACATTTCTTCTTCCAATCGGGGCAGAGGCGGCAGCCCGGGAGCCAGGTTGCCGGGGCCTTGGAGCAATGCAGCCCGACTCGATGGGAATTTGGGGGCAAACCCAGTCTTTTTCTGTGGGCAGTGGGCTCCTCGTCCCTCTGAAAGCCCTGGTGCCCGGATGCACGCTCTCCCACCAACCCACAGAATCGGAGACGCCTCCATGCCGGCAGGGCCGGGAGCGTTCCTCTTTCTGGTCTTGTGTGATGCCAGTAACAGGCCACTTCCAGTTGGGAGAGAGTGGGAGGCACCCTGAGACCCGCGCTGAGCATGGGAGTGGCCAGGCCGCGTCCTCCCGGGGGCCAGCCTGGAGCCTGCCCCACCCTGCTTGCCGACAGGATTATCCTGGCTGAGCCGAGGTCCGGGCGCACTCACCCGCAGTCTTCCCCCACACGTGGATGGCCTCTGAACTCGTGTGCTCGTGCAAGCCCACCGAGGGTGCCACGCAGACCTAGGAGGTCACAGGCGGGCTTGGCCGGGAGGGACAGGGCAGGGTGCGGGGACTTGTGGTGGAGGGGCCCTTCCTCTACCCTCCCCAGGAAAGCCACCCACTTCCCATCCAGGGTCCCTGTTAGAATCAGGAGCGTTTGGCCCTTCAGAGGGCGGCCGAGGCTCGTGCATTCTGGAAGAGCTGCGTGGCTGCGCAGACACACCGGCCTCCGGGCAGGAGGAGTTCTGTTCCTGTGCAGTGGGTGTGGAAGCCGCCCTGAGCCCTCGGGGGTGTGGGGGGCTCCAGCCTCAGTCCAAATCACCGGGTGGCCCGGGTGTGTCCCTCCTCACCTCCATGGTCCTCTGTGAGACGGGAGGGCTGCTGAGATCACATCCAGGATCCCATCCGCCCTGGTGCGCTCCAGCTTGGGCTCCTCCCACTGGCAGAAGCAACCGGCTCACGCCTGTGGGAGAAGCGCGCAGGCTCTTCCTGCGGGAAGGCAGCTGTGGCCTTTGTCCCGGGTCAGTTCCGGGGCGGCTGGTGGTGCTGCTGCTCCATCGTGGGACAGGGCCTGCCTGGATGCAGTGTCTCACACTGGGCCTGACTGTGCCCCACGCGGGCTGGGCTGTCAGGGCATGACCTCTAATGCCCTTGGGGGTGGAGCCGCTGCGTTCCCATCTCCAAGAGAAGAAAATTGAGTCTTGGCAAAGCTGACCCCCTCTCCTAGAGGTGCTGCTCCAGCACCCCCATCCCCAGGCCATGGGTCCAGCAGGCTGAGGAGGCGTGAAGCCTGGGAGGGCGGCCGTCTGCCCACGGCTCTTCCCTGCTATCCTGGCCACAGCTGCTCTGTTTTGGGGAGGAGGTGGCTTTTCCGAGAGTGGGGGAGTTGTCTGTGAAAACAAGGGCGTGAGCAGCTTTCCACAGTACCCCAGACCCCGAGGGCAAGAGGAGAAGCCGCCACATGGCACGTGTGCTCTGGGCAGTCGAGGTCAGGGTCATCACCGCGGGCCGGGGCCCCCGCCCTCCCTCTCCTGACCTGCGTGCTCTTTTCCAG

Seq C2 exon

CTTGCGGGAAGTTGACGGGCATCAGTGACCCCGTGACTGTCAAGACCTCCGGCTCGAGGTTCGGATCCTGGATGACAGACCCTCTCGCCCCTGAAGGCGATAACCGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000130558-OLFM1:NM_014279:4

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=PD(44.9=93.4),PF0154011=Lipoprotein_7=PD(42.9=83.6),PF0149614=V_ATPase_I=PD(45.2=91.8),PF041569=IncA=PD(45.2=93.4),PF131661=AAA_13=PD(46.5=96.7),PF045827=Reo_sigmaC=PD(46.1=96.7),PF060097=Laminin_II=PD(18.3=24.6),PF138741=Nup54=PD(53.6=96.7),PF055317=NPV_P10=PD(50.0=82.0),PF045137=Baculo_PEP_C=PD(53.6=96.7),PF0080420=Syntaxin=PD(59.2=95.1),PF100464=BLOC1_2=PD(38.7=39.3),PF078897=DUF1664=PD(59.6=86.9),PF093215=DUF1978=PD(65.5=90.2)

A:

NA

C2:

PF097304=BicD=PD(0.1=0.0),PF138741=Nup54=PD(0.1=0.0),PF041569=IncA=PD(3.1=11.1),PF131661=AAA_13=PD(12.2=47.2),PF0080420=Syntaxin=PD(1.8=5.6),PF061607=EzrA=PD(10.7=36.1),PF039618=DUF342=PD(12.6=47.2),PF045137=Baculo_PEP_C=PD(7.0=25.0),PF083897=Xpo1=PD(8.0=19.4),PF0219111=OLF=PU(38.6=88.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000360858