MmuINT0113073 @ mm9
Intron Retention
Gene
ENSMUSG00000026833 | Olfm1
Description
olfactomedin 1 [Source:MGI Symbol;Acc:MGI:1860437]
Coordinates
chr2:28070129-28078177:+
Coord C1 exon
chr2:28070129-28070348
Coord A exon
chr2:28070349-28078070
Coord C2 exon
chr2:28078071-28078177
Length
7722 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
3' ss Seq
CTGTGTGCACTCTGTTGCAGCCT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG
Seq A exon
GTAGGCCCGGCACCCTGCCGGTGTGGCACTGTCTGGCCCGACTCTGCCACACACGCAGGTGTAGGGAGCAATGCTGAAGCCACAGTGCCCAACTGGCCTCAGCAGTGATGGCTGGCTGCATCAGGGCTTCTGGGTAGGGCCACCCAGAAAGAGCAGCAAGGAGTGCAGGCCACACCCACCCCAGGCCATCGCCCATGTGCAAGCCCAGGGCAGGGCCAGTTCCAGACCTCACTGAACCTAACATTTGGAAAAAAATATATATGATATTAGATGCCACATGCTATTGGGTGGGTGCACACGTGTGTGCACAGGTGTGAGTGCTTAAAATGCATGTGTGTGGTCCATGCATGTGTTTGTAGGATAGATTTAAAGGTCTAGAAACACATCTCCAACCAGATTAAGAAGAGAACTTATAAGACACCTTGAGGCTATGCATCAGGTTTAGTTGGAATTAAAAAGGGGATACAGCTCCAGGCTATGTATGGGTAGAGCAAGTGGGAGCCGTCTGTCGGAGGCCTGGGTGCAGCAAGGTGGTTTGCCTCCCTCTCAGATTCATGTTCCCCGACAGTCCTGAGGTGGGGGGCATCTGGGCTCTGATTACCTAGTGGCTTTGGCCATACTGCATGTGTGGATGTTCATTGTCAACATTCCCCCATAGAGCCTGACCAACTCATTTTTTTTCCTAGCGTGTACATATTAGGGTGACTTTGCCTTCAGAAAGATTTCTGGGGACTCTGTGTGATGCTCTGACTCAGTCCCTCCTTCATCCACCCCTTACAAATTTAAAATATCCCAAAGAACAAACAACCTTTCAGAAGCCTTGGCATGGACCAAATAAATGGTTCTGTTGCAGAGCAAACACAAGGACCTGGGTTCAGTGCCTAGAACTCATGTAAAAAGAACCCTAGCGCGAGGAAGGGAAGAAAGGTGGGTCTCAGGGCTGGCTGGCCAGCTGATGTGGCCCACTTGAGAAGTAATATGGTGAGTGACCCTGTCGAGGTGGCTGGCTCCTGAGGAATGAACCTAAGATTGTCTTCTGGCCCCCATAGGAGCTCATACATACATGTGTGCACCTGTACAGACCAAACATGCAAACACGGGTCCTCGGTGTTAGATGACAAATGAGAACATTCGCTAGACAAGTAGTCTCGTGACTTCCAGGTGGTTCTCAGTGGCTGCTCCTGGCTTGTCCCCGGCAACAGTGAAAGTCTGGGGCTCTCAGGCCTGATGAGCGGGGAGACTATGCTGTCCCTGGGGACTAGTTGTTTTGAAGAGACACTTGCAGGGCCACCAAGGAATCATGTCCCGTGTATATTCGTACTTCTGTGTGTCATGAAACCCATGACCCACATGACAGTCAGCCCGTGTGTGGGTCTGGATGAGAGCCTCCTCCTTTGCCTGGGCAGGTTTTCTAGGTGTGCCTAGAGTGTGGTGCTGAGGCACAGGCTATGGATCCTCTCTAGTCCTCCCTTGGCTTTCCACCATGGCCTTTCTCCCAGCCTCCCCAGCCAAGCACTTAGATGTCTCTGAAGAGCCCAGAGGCTGGGGTTGCTATTTATTCCTCCAAAATGCTGTTTCCCCTCCCCGGTGACCAGGCTGGGTGTGATACCTCAAAGAAACCAAAAAAATCCAGATGGAGACTATGGTAGGACATTACCAAGGATGCCAAGCTAGTGGGCCTTTGGGAGAGGGGGGCAGTGTACACGACTCTCCAGGTTATCCCAGGCAAGCCAGACTTCCCATCTGTCCACAGCCTATCTTTAGTAGTCTCGTGAATTTACCTTATGGCTGGGATCTTGGGGCTTTCACGTGGCTTAACTGCCCTTGGGCTGTTAAGACATGTCACTTGGGAATGAAGAGAGAGTGATAAAGCCCTGGGATGTGCCAGCCTGGTCATCTGAGGGACTTCGGTAGTCACATACTTGAAGAGAAACAGCAGCTGGGGTGGGGTAGTGAGCTCTGAACCCCCAGTCTGGGCAGCTCTGAGGTGCCAATCTATAAAATAGTGAAAGTAGCAAGAGCCGCTCATCAGCAGGTGCCTTTCCCAGGTCCTTACTGCCATCTTCTATTGCAGTGTCAACTGATATGCAGCATAAAGTTACAGAGAATCCTCAGGTCCTGGGGTCACTATGAGAATGTGTAGATATTGTGCATGTTACCAGCTCTGCACTGCCTGGCTCAGAGGAGCTGGGGGTGTGATAGATCAGTAAGTGGGTGGGTGGGAAAGTGGAGGTGGGGAGAAGAAATAACTGGAAGGAAAATGGGACAGAGGGAGGCAGAACTGATGACGTATGCACGGACAGGTAGAGGATTGGTCAGTGGCTGGCTGATGCCTGGCTAGAGAAGTAGCTGACAGCAATAGGTGGCAGATGGTTGACTGATAGGTCTATAGATGGGTTTATTATCTGTCCCGGGCCTTCATTCAGTCCAGGAACATGAGGACTAACACCCTATGGCTGCTTAATTCAGTCTTTGCTTTAGCCTTGCTAAGACAGGGCATCCCCCAGCCTCCCTAGCAGCTGACTAACAGGATGACAATCCCAGGACACAGCTTCTGGCTGTGGGCAGCACTCACTGCTGGCCCAGTGGGTGAAACTATACATGTGGAAGCTCAGTAGTTGAGTTCTCAAGCCCCAGTCTCCCCAGTGTGTCTGCCTTAGCAGATGCTTGGTTACATTAACTGGGAGTGAGAGAGGTAAAGGCTCCCTGAGTCTCTCAAAGTCTCTTATCAGAACTGCCCTGGTTGCCTCTTTCCTTCAAATCAGTTGGTGAAAATTCCTTCACACACGCAGAAATCACAACTCAAGGACCAGAGTTACAGTTGCTCCTGGTTCCTTGATGGGGTGACATGCTTTAAGTAGCCCAGCCAGGTGCTAGAATTTGAAACATCTTCCTTCTGGACTGAGCTTAGGCATAACATGTCTTGGGTCTTTTCTGGGAAGTGCAACCCCCTAGAGCAAGTCTTGTCCATAGGCAGGAGAGAGGCAGTGCTGCTACCTAGAACCCTGGTGGCTGCTAAGAGGATGCTGCAAGGTCAGATCCCAACAGCTAACCTGGGAAAGGCCAGAGCTTGGGCCTCAGCACTCCCCAGCCACTCCCCAGACTTAGGGCACAGTGGTACTGCAGGCTTCCTTGGTCACTGTCACCATGGAGGACTAGCTGGCTTAAATGACATCCCTGTCATACTATCCTGGCTCTGATGCCAAGGGCTCCCTGGTGGGATTTTTTTTTTCTTTCTGCTGGTGGGTTGGAAGACCCCAGATAGCTAGGGTCAACCCAAAGAGTGGTTTTTACTCTACTGAAAATATGTCTTAGGAAAGCTTGTGGCTTCTACTTACAAGCTGCCTGCCGGCCAGGTGAGCTATCCACCCAGCATCCACGCTTAGGATTCTAGGTGCAAGTTCCTGCTCTGGTCGGGTACAGTGGCTACTATCCTGTGCTGCGCTGTGAGCTCCTATCTGTACTTCAAGGGAAACCAAAAGACACCTTCCTAACACTTGAGATGCCAGAGTCAACAGGCAGAGGCTGGCCTCCACTAGCAGGGGCAGTGGACATAGTGGCCCACAGAGCTCTGTGATGACTCCCAGATGGGAGAGTTAAGGGTGATTTGACAGTGGAAGCCCAAGGGATGAGAACCCAGGAGTTCTGCAGCCTACAGCCCCTATTGGACCAGACTTGCCTACTCCATCTCTTGTATAAGGTGGTCCACTAGAGGCCTGGCCTCTCCTTACTAGGGCAAGAGGGGAAAGATGACTCTAAGTATATGCTCACAGGTCTGCTGTAGGCTATGGGTCCATACCTGGGCCTGAGTTAGGGCTCTTTCACCTGTAACTTGGGCTTTGTTCCCAGCCTGCAGACTTCTTTCTACATGGCTCTTCTCTAGTCTCAGGGCTAAACGCTGAGAATGAAGGCCAAAGCCTGTTTGAGGACACAGACCTTCTCACCCAGCCTCCCAGATATGCCTATCCTGACCTAAGCTTTGAGATGGTCCAGGCTGCCCTCAGCCTGGCATCTTCCCAGGAAGTGCACAAGGCATATGGCTTGTCTAGCTTCCAGCTTGGCCAGGCATCTCCATCCCAATACCCTCCCACCTGGGCTCCATCCCTCCAGCAGGCCTCTTCCACCCCGCCCCCACCCCCATCCCACTCCCACCCCCAACCCCACCCCCGACTATCCTGAGTGTGTGACTGGAGAGGGACACTTTCTAGAACTGAGAGTGCCAAGATACTGCCAAGCCTCTGCCGTGGACTCCTTTAGAGTCTGTCAGTTCGAGAGGTCTTGGCAGAACTAGTGTGGACAGGGAACCAAAAATAACTCCCTGACTCAAGGAGAGCAGGCAGCCTCCAGCCCCATGGGCCCTGGAAACTGTGCCTGGCCCAGCAGCTTAGAGAGCAGGAGACACAGTAGCCACACCTCCTTACCCTCCTCAGCATTGAAGCATTGGAAGGCTGACTGCTCTCGGTGACTGTGCACATAGAGGATGGCGGGTGTGGCTGGCAGGCTGGACCTGCTGGGCATCCTTCCTGTAGAACTCAGATGTGGACCTCTGTCACTTCTGAGAGAGTGAAAGGAAAGGTTCAGATGGGTGGAGTGTTCAAGGCTGCCCCCGACCTGGCTGAGAGCAAAGTCTTGTTTCCTGCACATTCCCATCTGAATCCATGGTGGAATGGCTGAACTATCCAGACTTGTTCTCAAAGGCCTGTGTTGTGCACCGATGCTAGTGTGCTTTCCTGGGGGTGCTGCTGGTAACCAAGATCGACATGGGTAGCATGAAAGGTGGGCTTCACTCCCCAGAGGCTCACCCTCCTGAGCCCAGCACTTGTCAGATGGTGAACTGATGTTCTCAGGAGGCTCTTCTGAGAACTAAGTCATTTGTTTGTTTATGGGAAGGAGGGTGAGTGGAAGAGACTTCTTACCTGCAGCAGCAAGCCCCAGGTGCTTTTGTTGGCAACCCCAGAAAATATGGATCTAGCTAAGGTCACAGAAGTGGATGGGCATGTGTCTGGACCCAGTCCAAGAAGCTAGGCAGGAAGGTGAGCCACTGCTCTAAAGTGGGAGTACAGTAATTCCAGCCATGGAGGCAGGCAAGGCTAGGACCAGGGCTAGGACCAGGGCTAGGCATCCAAGCTGAGGTGGGCGTCCTCCTGACATTTCTGCCATGTCCAAGTCATGTACAGGAAGACATCAGGTTTCTGCAGAAGAATGTCCAACCAGGAAGGGACCTCCAGTGGATTTGGGACAGATCTAGTGTGAGTGGCATCTCAGAAAATCTAGTGTGTGGCTAAGTCATGTGTTGGCCACAAGCACCGCATGCCATTGGGCGGTAAGGATGCCTTCCACAGAGCTCTCCAGCCATGACAACTGTGCATGCTGATTCCTTTGAACCTTAACCTCCAAGCAGCTCATAGATCGTGTCTCTAGGATGGGCAGGAGAACTTCTATGAGAAATTACTCAGTGCTCTGTTGGATGATGGGTCTGGATGGCAGAATGGGGTCTGGGAAGAGAACTTGGGGAGAGGTTGCCTTCTGTTGGGTTCTTTCAGTTCCCACCCATTTTAGAGGGAGCCTCTGTCTCCTTGGCAACCCAAGACCACCTGCTAAGTGAACAGGAACAAAGAAAGAAGTGGGAGTGAAGGGTAGAGTCCAGCCTGGGCACATGGCTTTCCCTGCCTGGTCTCTACAGGTAGCACATAATGAACTCACTCGAACTTCAGAAGGCATAAAGGTGTGCAAGTGGGTGGGTGCATTTGTGTTTGTATGTGTGTGCGTATGCTTGTGTTTGTGTGTGTGTATATGCATGTATGTGTTTGCCTATGCTTGCGTTTGTGTGTGTGAGCTTGTGTTTGTGAGCTTGTGTTTGTGTGCTTGTGTTTCTGTGTGTGTATGTATGTATGTATGTGTTTGTGTATGTGTGTATGCTTGTGTTTGTGTGTGTATGTTTGTGTTTGTCTATGTGCTTGTGTTTCTGTGTATGTATGCTTTTGTGTGTGTATGCTTGTGTTTGTGTGTGTATGCTTTTATGTCTGTGTGTATGCTTGTGTTTGCATGTGTGTGTATGCTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGTTGGTCACAGCACTCATGGAAAATAAATTTTTCAACAGACCCATTGGGATCCTCACTTTCTGCTGCTGTCCACACTGATCAACCTTAGCCTCTTCCATCCCCTTCTTTTTCCTTTCTCTTCCCTTGGTATCTCCTCCAAGCCCAGGGCTTAGGCAGGGCAGGCCAATGTGAACAGAGGCCAAGTGGGCATGCTCTGTGCTCAGCGATATACCTTTTAGACCCTTGTGCTAAGACTTCCATAAAACCCTGAGCCTCAGTAGAAAGTGTTGGTGTGGAAAAACCCAAATTCCTCGTGGGGGGGGGGGGCTTTGAGGAAGGGACAGGAGAGTGGGCACAGTGTGGCACTCCCTCTTCCAGTCTGGGCAGGGATACCAGGGCTGGGACATTGGTGGGTTTTTTTTTTTTAATCCTGTTGAGCCTCCCACTGTCCAGAGTCCCCTCTCTGCTGGCTTTTAGGCCAAGCCAAGCCGTTGTTCTCTCCAGCCTTGTGCAACACCACTGTGGAGATGCCCACCCTATTGTGGGCTTGGGGAGATGGTGCTGAGTGTGGGAGCAGGGCAAACTGCACCCTCCCTGGGGCCTGGCCTGCCCTGATCACTGTAGGATTATCTCTGCTTCCCTGTGGTCTCAGGTTAAGCCTCTCACAATCCTGCCTAAGCAACTGGATCTTCTCTGAACTTTGCAGACTGTGTGTGTGTATGCTAATGTGGTCCTTGAGGGTCCTATAGACTGGGAGGTGGGGGGGGGGGGGTCACACTCAAGCCTGACCTCATGGGATGAAAAGGAGAAGTCCTATATATCAGGCTCAAACTGGGGGTCCATAGGATGGCAGGAGAGTTGCAGACTAAGGCAGGGGTGCTGGTCACAGTTTCAGCACCTCCTGAATGACTAAGCTGTAGCTCTGAAGTCACCTCTGGCCATCTGTGAGATAGGAGGCATGCAGAGGTTGCACTCAAGATCCCACAGAGCATGAGGCTCCGATCCCAGCCCACTTGAGAGCATGGAAAGCTCACACACACACACACACACACACACACACACACACACACACAGCAGGACGCCAACAAGCCTCCACCCACTTCCACCAGGGGGCTGGTTCCAAGACAGACACATGCACAGGAAAGATGCTCCCACAGTGTGGGGTGCTGTTGTGGGCTGCTAGGATTGTCTTTCTGTTTGGGGAGGTGAATCCTGCCTGGGTCCAGGAGTCTAAGTTCCCACCATGCTGGCTAAGTACTTTATTCCAGCAGCCAGAGACTACTGAGCACTTTTGCTCAATTTCCTAGAGAAGACTGAGGCTTGCTGAGGCCTACCCTCACTGGTTATCAGGCTGGCCTGGCCTTTTGCTTACAAGGAGACATGAAGTCCCAGAGGGCAGCCACTCACTGCTATGTCCTGCCGATGCTGCCCTCGGGTGCTCTCTCTAGAGGAGGGTTGGCTCTTCTTGGGCCAACAGTAGAACCTGTGTAAGTGACATCATGAGCTGCTGGGCTTCAGATCTGAAGGGGAAGAGGAAGAAGCAGCTGTCCTCTGAGCCTAGCTGTGCCATTGGGGGAGGGGCCAAGGCTCTCCATTGCCTATTGGCCCTCACCTGTGTGCACTCTGTTGCAG
Seq C2 exon
CCTGCGGGAAGCTGACAGGCATAAGTGACCCAGTGACTGTCAAGACCTCTGGCTCAAGGTTCGGGTCCTGGATGACAGACCCGCTGGCCCCAGAAGGCGATAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026833-Olfm1:NM_019498:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.9=90.5),PF045827=Reo_sigmaC=FE(44.8=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=PD(50.4=93.2),PF045087=Pox_A_type_inc=WD(100=28.4)
A:
NA
C2:
PF101864=Atg14=PD(12.0=58.3),PF045827=Reo_sigmaC=PD(8.6=38.9),PF045137=Baculo_PEP_C=PD(5.4=19.4),PF0219111=OLF=PU(12.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: