GgaINT0126457 @ galGal3
Intron Retention
Gene
ENSGALG00000002515 | NOE1_CHICK
Description
NA
Coordinates
chr17:8300564-8305583:+
Coord C1 exon
chr17:8300564-8300783
Coord A exon
chr17:8300784-8305476
Coord C2 exon
chr17:8305477-8305583
Length
4693 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
3' ss Seq
AGCCTTGCACTCTCTTTCAGCTT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG
Seq A exon
GTAGGCTCAGCCCAACATGGTGGCACTGGCTAAACACCATCGATGTCCCAACACACCTCCCGGCTGCAGGCAGAGATGCGGTTTGGCCATCTCCCAGCGCCTCACCTTGCTGCAAGGGGAGCCCCGCAGCCGGGCGCCATCCTGCAAGCACCTGTGCTGTGAGCAACACTCACCCTGCCAGCTGTCCCGCTGGGGATTGCTTGCATGCCTGATGTTGCTCACGGTGCATGTGCTTCAGGATCAGGCCCGTAAGTAGGCATGTGACTTTTTGCAGCGTTTGCATAAGCGGACGGCGACGTGCGCGAACGCGAGTAGCGCTTATGCAAAGCAAACACATGCGCCCATTCTGCTTATGCATCAATGTCTAAGCTGTTTGCTACCTGGACCTAGCACATCAGCAAACGTCCCTGCACCCCGCTTTAAGCAGTGCGTGTGCAGGCTGCGAAATCAGTTTCCTTTGTTCCTTTTGCATCTTGCAAACCCCTCGTTGAGAAGAGCATGACGTGCTGGCGCGGCTGGGACGCTGGGCAGGATGGGGGCACCCAGCACCGGGCAGAGGGGCAGGAAGGGGGCTGCCTCCCATTGCACATCTCCCCGCTGCTTGCTGCCCTCTCGCTGCCTTGATTTAATTTCTCCTTCCATTATTGACTTTCTCGTTAAGCAATTTAGGTAATCTAAACACATTAACTGCTCTGCAGTCTATTTTGGTAGCACATATGAAATTACACTCTCAGGTAACTTCAAGGAAGAGCTGATCTCTTCTCAGCACTGTATACCCTTGGCAAGGTAACGTTTCATTTCACGTGTCTCCACTGTTGGAATTGCTTTTGCTTGTTTCTAGGCGCCCCTACAGATCCGCAGGCAGCCACCTCCCTGCCTTCCCATCCTGTTACCTTCTGCTCCCCTTCCGAGCTTTCCCTATCATAATTTTGGAGAGGCCCCTGGTCACAGAGGTGGCTTTATGGGAGGAGATGGTCCCCTGTGAGCACCCACACCTTCAGCCCGTCCCTTGGGTAGCAGGAGAAGCTGCTGGTGGTGGGGAGAGGGGATGGCAGCAGTACCAGGGATCTACACCTGGGCCGTGGGATTGCATACCTCAGTACAGGCCTTTCAACAAAACCATCCTGTACCTCAGGGCTTCAAAAGCATTAAGTTTGCCCATGCAGTTTTCACCCCTTCAGCTTAGGGCTCATTGCATCCCCCCACGCCCATGTCCTCCCAATGAGACATCCGTCCAAGCCAGCGGCCCAGGTAAGGCTGAGGCAGCTGGGATGGAGAGGTCTTGCAGGCAACCTTTTCTAGCAAGTTTTGTTGTCTTTTGAAATTATTCCTATTATTTAGATTTTATTTGGGAGTTTTGGCTTTGCTCCTTCTTTCTCCTCCAGCTGTGGAGTAGTTCAGGGCAGCTTTTGTGCCCTGCGGATCTGCAGCACCCCTTGTGCTCACAGAGACCAACTCTGACTCTTGCAAAAGGGTTCTCCCGGGAGGCTCTGCTGCTCACCAGGAGGGTGATTTATTCAGGCGTTTAGCAGCAAGCAGCACAGACTAAATGCCCAATGTTGTTTATCACTCCAGAGTACAAACCAGTGCAAATAGGAGTTAATTGAGTTAAATTCAGGTAACGACCTTACAGCCACTTTGCTGGCACATGGTAAGACCCTGTTTGCTGAGGATTGTTGCTTGCTGCAAATTATCCGCTCAGAGGGATGCACTGAAGTCTCACATAGCACATTTCAGCTTCATTTGCTCCTGCATGGGGCAGCAAGGCTGCTCACCTGCGTTCACCTGCTAGAGCAGGGCTGGGGACCGGGAGGTGGAGGGCATGTCCTGCATTCCTGCCCACCTCACCTCTCCAGGGAGTGTTGATGCTCAGCAGTGCAGCAGCGTTCTCTTTAGACGTGGTCCTTTTTGTATTTGGGGTTTCTTAAGCGTTCTTGATGGATCAATAGTGAAAACACTTCCTGACCCTGTCGTGTGTGTGCGAAGGGAAAAAAGAAATCAATAACGGCACGTTCAATCTGTTATGCTGTTTACATTCTTAAAGATCACTATTTATATAAGGATTTTAACATTTCCATTACCCTGAGAGGAGCCCTGGGAGAGGGAAGGGGCTGTCACTCCTTGAATCAAGGGGGATTTCATTCGGCTGAGCTCTGTAGGCTCATGTTTGCCAATGGCATGAGCTTTCCCAAACTCCTGCAAAAAAAAACCCAGCCCACTGTCCTGGTGGATGGAGAAAGAGCAAATGTGTTTTCCCCTTTGGGAAAGGCCAGGTCCTGCTAGCCTGTGCCCAAAGTGTTTGGGATGGGCTGGGTGATGGAGGTGAGGGTAAGACGTGACCCCACATCCCCAGTGCTGGGAGCAGGTGGGGAGGACAGGTGGGTGCTGCTGGAGCAGAGCCTGGCAGCACAGCACAGGTGATTGCGTTGGTGGTAAATTGCTGCTAAGCTGCTAAACATTACTTGCTGGTGGGCTGGATCTCAGGGAAAATATGGGGTGGGGGTGTTAGCACCCTGGGAGGGTGGTGGTGGTCATCGTAGCTCACTCAAAGCGTGTTGTCTGCTGCTGGTGGTGTGGACAGGGGAAGGGGTTGTGTGTGCGTTGTGTTGTGTTGCGTTGCATTGCTGCTCTGTGGAGCTGCAGGAAGGTGGTTTGGAGCTGGGGCAGCCTGCAGGGCCTCAAAAGGGGCTGAGCTGTATTGATTCCCAGGAGCGGGGGCACACAGATCCCAGTGAGCCTCTGTTCCAGGGACCCCAGTAAGGGAAAATGGAGTGAAAGCAGTTCCTCCAGGAGTGCCCCAATACTGCTGTCCAGTTTCCCATCAGGTCATGGACTCGAGTAATGGGCAGCAGAGCGTGCTTCCCTGGTGCGCATTCATCCCTGAGAGACTCCCTGGTCACATTTCAGCACTGAAAGTGGTCCCAGAAGGAAAATAAGCTGTGAATACAGTCTTTGCCTTCCTTCTCTTTAGTGAAATATTGGACTCAGTCTGAGAGTCAGGAGATACAAGAATCCAAGCTTGGGAGCTGCTGCCGTGGTCTGAACTGCAGCACAGCCAAAGGAAGCAGCAGCAGCAGACCAAGTCCTCTCTGCCCTCAGTGATGTTCCTTCTGCTAGTGGTTGCTTGCCCCATAGAAAGAGGGAAAAAAGCTGATGGTGTTAGGAATGTGGTGCACACCTCAGCGGGAGCAGACAGGAATGAGTGTCACAGAGGCTGTAGCTGTGCATCCCCAGGGGTAACCCCACAAGAGCTGCAGGGACCTGGATCCTGGGGGCCAGGATCTGCTCTGTGATTGGTTCTGTGAGCCATTTTGGACATCTTCCCTTTTATTTGATGCCTCTGGTGGGTTTGTGCTGAGTAAGTGCCTTGTCCTGTGTGAGAGCAGCCCTCTTGCACTGCTGGAGAGCTGCTGTGGATGTGCCGAACGTGTATGAGGTGGTGCAAACAGCACTAGTTTACCCTTATCAGCTGATACTGCTTTTTTTCCCCTTTTACTTTTTTATTTTTTAATCAATGCGCTTTTATACAACCTTTCTCTCCGGGGAAATGGAAGGAAAGAGATAAAGTGACAGCAGTGTGGGGCGGTGATAATGGAAGGCAGCAAGGAGCAGATCTGTGATTAGGGCTCCTCTGCAAGGGGAATTCACCAGACATTAAGCATTCATTATTTTAACCCTTTGCGTCCCTTTGCCAATGGCTCCTCCTGAGCCGAGTTGTTCTGCGTGCACCAGGTAGGATGAGACCCCAGGGGAGACACCAGGAAACCTATGCTGAACTTTGGGTGCTGCCAAACGTTGGGTGCCGACCTTTGTTTGTCTCTCGCAGGAGGTGCTGCTGCAGGAATGCTCTGTGCAGGATGTGTCTGGGTTTTCAATGAGTGCTCCCGTAGCAACAGAGCGTTCCACGCTGACCACAGCCCATCCTGCTGCATCCCACTGTGTGCCTCCGCCTGTCATTCTGGAGTGCACATATGTTAAAATGATGGCGTTTGGGGAGACAGGAATGGCAGCTTTGGTGGAACTTGGGGATAGCAATGTAAAAAATAAAGTAAATATAAGGAATAAAGGAAATCAGCATCTGGCTCCTGGAGGGGGCAGTGGTGCAGGAGGGGCGCTCCTCAGCAGCCCCTGAGCATGCAGGCACGTCAGAGCAGGGCAGGAGGCTGTTAGAATCCCTAGATGGTTTTTGCAAGGAAAAGAGATTTATATCACCTATAATTTCCCACTTCTTTTTTTTTTTTCTCCTTTCTCCTTTGCATAACCTGTAACAAATGTGTTGCTTCCAGCAGGGCTGGAATAGACACGGCTGTCTTTTTATCTTGGCTGCACCCACTCTATTATAGCAGAAATGAGCAGAGCCGTTCAGCTAATTTCTCCACCTGGCTGCTCGACCCTGGCTAACTCTTCTCATTTTCTATTCTGCAGCATGAGCATGCAGCTGCTGCGGGAAGGCTTGTTTTCTTGGGGCAGCGCGATAAGGACAATTGTTGTTAAGAGATGTGGAACAACCATAAACCACCCGGCAGTTGTTCTCAACCTAATTGCCTTTAATTAAATAACAACACGGCTTCTTGGAGTGCTGGGATGGGGGGCAGTGGGGTCTGGCAGGGAAAGACCCAGCGTTAGAAAGCGTGTGCCCGAGCAGCGTGGCGTTGTTGGGAATGGTGCTCACCAGCCTTGCACTCTCTTTCAG
Seq C2 exon
CTTGTGGCAAGCTGACGGGAATAAGTGACCCAATCACAATTAAAACCTCGGGGTCCCGCTTCGGCTCGTGGATGACGGACCCTCTCGCCCCAGAGGGAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002515:ENSGALT00000003964:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(47.4=97.3),PF041569=IncA=PD(47.1=97.3),PF131661=AAA_13=FE(49.3=100),PF045827=Reo_sigmaC=FE(46.8=100),PF138741=Nup54=PD(56.4=89.2),PF045137=Baculo_PEP_C=FE(64.6=100),PF045087=Pox_A_type_inc=WD(100=28.4)
A:
NA
C2:
PF101864=Atg14=PD(12.0=58.3),PF131661=AAA_13=PD(4.1=16.7),PF045827=Reo_sigmaC=PD(4.5=19.4),PF045137=Baculo_PEP_C=PD(0.9=2.8),PF0219111=OLF=PU(12.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]