HsaINT0122646 @ hg19
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:30264]
Coordinates
chr16:70164326-70165322:+
Coord C1 exon
chr16:70164326-70164447
Coord A exon
chr16:70164448-70165204
Coord C2 exon
chr16:70165205-70165322
Length
757 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATCAACCTGTCCATTTGTAGTGG
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTGTTCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCAAAAAAGGTCAAGTTACTGGAGTGGAGACCGATAAAGGACAGATTGAATGCCAGTATTTTGTCAACTGTGCTGGCCAG
Seq A exon
GTAGGTCAGCACCAACACTGCTGTTCTTATTTAACGTTTGTCTCCAAGATTTTTTTGGTGTAGAGAAGTAAGATTAGTATTGTGATTGGTTATACAGATATCAGTAACTACGCTGTTTCTTGTAGGGTATTCTAAATCAGAAACCTACACTTAGTCTGCAAATAGAAGCCTGTGTGACCTTGTCCTTCCTCCACACTGGGTTGATGGGTGCTATCCTGGTCAGGAAGGCCAGCAAATGGTCAGGCATTGACGTGAATCCTTGGCACTGGGTCTTGATGTTACATTTCATTCTATAACCTAGCAAATAACATATTAGGCTATTTTATTGTGTCAGGAATGTGGACACTAATTTCCAGGACACTGCTTCTTTTAAAGCAGATTGGCTCTTGCCTTCCATGCTATGATCCCGAAGTGAACTAAGAAATACTTTTGCCATGTGAAGTTCATTTAGTGATTGCTATTTGGGGTTTGTAGCTGAGCCCAGGCGTTTTATCAAAAGGACCTCCTTTGGTTCCCATGAGCTCCTTTGACTAGCTGGTAAATATCTCTTCCTTTGATCTCAAAGTAATTTTTATGTCTTAAAAAATGTAGTATTGCTCCCCATCCAAATAATTGAACTAAAGCAGGCTGACTTCCCACACCTGACACTGTAGCAAGAGCACACATAAGCCACTTGGAATTAATCTCAAGAGGCTGAACTTGCTCATTTTTATTTCTGTTCCTCTTCCCACCCACAAATCAACCTGTCCATTTGTAG
Seq C2 exon
TGGGCATACGAGCTGGGTCTGTCCAACGAGGAGCCGGTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCTGACTCGCCCCTTGGAGACCCCTCTGCAGAGCAGCACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-PDPR:NM_017990:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAGATCTATGACCGGACA
R:
TTGGTGTGCTGCTCTGCA
Band lengths:
240-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)