DreINT0016271 @ danRer10
Intron Retention
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50957614-50957965:+
Coord C1 exon
chr18:50957614-50957735
Coord A exon
chr18:50957736-50957847
Coord C2 exon
chr18:50957848-50957965
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGTGTGTGTGTGTTTCAGTGG
3' ss Score
10.7
Exon sequences
Seq C1 exon
GTGTGCAGATCTTTGAACACACCAGCGTCACACACGTGCTGATGAAGAATGGTCACGTGGCCGCAGTGGAGACTGATCGCGGGTCAGTGGAGTGTGAATACTTTGTCAACTGTGCTGGACAG
Seq A exon
GTGAGTCTGGACAACACAGGACTACCCACAATGCACTGCAGATCTGGCCTGTCAAACAGAATTCTGTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTGTGTGTTTCAG
Seq C2 exon
TGGGCGTATGAGCTGGGTCAGAGCAGTGAGGTGAAGGTGTCTGTTCCTCTGCATGGATGTGAGCACTTCTACCTGCTGACCAAACCTCTTTCTGAGCCGCTACCGTCCGACAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288:ENSDART00000158517:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTTGAACACACCAGCGT
R:
CTGGACTGTCGGACGGTAGC
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]