RnoINT0109337 @ rn6
Intron Retention
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43129434-43129957:-
Coord C1 exon
chr19:43129836-43129957
Coord A exon
chr19:43129552-43129835
Coord C2 exon
chr19:43129434-43129551
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCGCAAACTGCCTGCTGTAGTGG
3' ss Score
0.54
Exon sequences
Seq C1 exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCATGTACTGACCAAAAAAGGTCGAGTTACTGGTGTGGACACAGATAAAGGGCAGATCGAATGCCAGTATTTTGTCAACTGTGCTGGTCAG
Seq A exon
GTAGGTTGGCCACAGTACTACTGGGTTTCTGACTTTATTTAAATTTGGACTTTTTACTGTGGAGGTAGAAGATTATCATTTTACTGGTCTCAGATACTATACTGCTTATTTGGACTGGGTAATCCTGAATTATATTCTAAACCAAAAAACCTATACTTAGTCCTCAGCGATGAGCAGCTAGAGGTTTGGTAGTCTTTCTCCACATTGGGTAAGGTAATATCATCTTAGTCAGCAGCTACTGACTGTGTTTCTGTTCCTCTTCTCCCGCAAACTGCCTGCTGTAG
Seq C2 exon
TGGGCGTATGAGCTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCCCGCTGCACGCCTGTGAGCACTTCTACCTTCTGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAGCACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593:ENSRNOT00000038452:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATTTATGACCGGACAAGTGT
R:
TTGGTGTGCTGCTCTGCA
Band lengths:
236-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]