GgaINT0025824 @ galGal3
Intron Retention
Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1768175-1768782:-
Coord C1 exon
chr11:1768661-1768782
Coord A exon
chr11:1768293-1768660
Coord C2 exon
chr11:1768175-1768292
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
3' ss Seq
CTTTTCCTTCCCAATTTCAGTGG
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTGTCCAGATCCACGAGCGGACGAGCGTCAGTCATGTGTCAGTGCAGAAGGGTCGTGTGACCGGAGTTGAGACCGACAGAGGACACATCAAATGCCAGTACTTTGTCAACTGTGCTGGCCAG
Seq A exon
GTTGGATTATTAAATTGCTGTTGCCCTCGTAGTACCAGCACCCAAATGGTGTTTGCTTCTAGAAGCAGAGCCCAGCGTTGGCTCTGCTGTACAAATCTTATTTTGCTTTTGACCTATCCTCGTCAAGGTCTGGCTCTTCTAAATGTTACGTCAGAAACACAAATACAGTCTTTGGCCTAGATGGTTTAGATCCTAAGAAAACAGGGAAAAAAATGTATTTGTTTAAGGCTTAGGCACTGAGAACCACATCTTATTTGGCCTTTTATGAGAGCCAGCTCGCAGAGGTAATCTGTTTGTATGTGCCTTTTTTATTAGAGGTTGTTTTCTTCTGCATTCTAACATGCACTTCTTTTCCTTCCCAATTTCAG
Seq C2 exon
TGGGCCTACGAGTTGGGCCACTCCGGGGAGGAACCAGTCAACATCCCACTCCATGCCTGCGAGCACTTCTACCTCCTGACACATCCTTTGAAGGAACCTCTGGCAAGCAACGTCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690:ENSGALT00000004241:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGATCCACGAGCG
R:
GGGACGTTGCTTGCCAGAG
Band lengths:
238-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]