HsaINT1026589 @ hg38
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70130423-70131419:+
Coord C1 exon
chr16:70130423-70130544
Coord A exon
chr16:70130545-70131301
Coord C2 exon
chr16:70131302-70131419
Length
757 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATCAACCTGTCCATTTGTAGTGG
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTGTTCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCAAAAAAGGTCAAGTTACTGGAGTGGAGACCGATAAAGGACAGATTGAATGCCAGTATTTTGTCAACTGTGCTGGCCAG
Seq A exon
GTAGGTCAGCACCAACACTGCTGTTCTTATTTAACGTTTGTCTCCAAGATTTTTTTGGTGTAGAGAAGTAAGATTAGTATTGTGATTGGTTATACAGATATCAGTAACTACGCTGTTTCTTGTAGGGTATTCTAAATCAGAAACCTACACTTAGTCTGCAAATAGAAGCCTGTGTGACCTTGTCCTTCCTCCACACTGGGTTGATGGGTGCTATCCTGGTCAGGAAGGCCAGCAAATGGTCAGGCATTGACGTGAATCCTTGGCACTGGGTCTTGATGTTACATTTCATTCTATAACCTAGCAAATAACATATTAGGCTATTTTATTGTGTCAGGAATGTGGACACTAATTTCCAGGACACTGCTTCTTTTAAAGCAGATTGGCTCTTGCCTTCCATGCTATGATCCCGAAGTGAACTAAGAAATACTTTTGCCATGTGAAGTTCATTTAGTGATTGCTATTTGGGGTTTGTAGCTGAGCCCAGGCGTTTTATCAAAAGGACCTCCTTTGGTTCCCATGAGCTCCTTTGACTAGCTGGTAAATATCTCTTCCTTTGATCTCAAAGTAATTTTTATGTCTTAAAAAATGTAGTATTGCTCCCCATCCAAATAATTGAACTAAAGCAGGCTGACTTCCCACACCTGACACTGTAGCAAGAGCACACATAAGCCACTTGGAATTAATCTCAAGAGGCTGAACTTGCTCATTTTTATTTCTGTTCCTCTTCCCACCCACAAATCAACCTGTCCATTTGTAG
Seq C2 exon
TGGGCATACGAGCTGGGTCTGTCCAACGAGGAGCCGGTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCTGACTCGCCCCTTGGAGACCCCTCTGCAGAGCAGCACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857:ENST00000288050:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAGATCTATGACCGGACA
R:
TTGGTGTGCTGCTCTGCA
Band lengths:
240-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains